Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19510 209 / 1e-57 HD HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT4G29940 140 / 2e-34 HD PRHA pathogenesis related homeodomain protein A (.1.2) AT5G09790 45 / 0.0002 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018741 [exp] 1026 / 0 AT3G19510 304 / 4e-92 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10020011 [exp] 149 / 4e-37 AT4G29940 429 / 7e-141 pathogenesis related homeodomain protein A (.1.2) Lus10015536 [exp] 145 / 5e-36 AT4G29940 440 / 4e-144 pathogenesis related homeodomain protein A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G093000 [exp] 251 / 3e-71 AT3G19510 291 / 3e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.001G298400 [exp] 237 / 2e-66 AT3G19510 292 / 1e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.018G142400 [exp] 147 / 1e-36 AT4G29940 461 / 4e-152 pathogenesis related homeodomain protein A (.1.2) Potri.006G075500 [exp] 147 / 2e-36 AT4G29940 466 / 6e-154 pathogenesis related homeodomain protein A (.1.2) Potri.012G018300 [exp] 51 / 2e-06 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 49 / 6e-06 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10024826 pacid=23178890 polypeptide=Lus10024826 locus=Lus10024826.g ID=Lus10024826.BGIv1.0 annot-version=v1.0 ATGAGCCAGACTTCTCCTCACAGTGATGACCAGAAGTCAACCAATTGTGAACAGTTCAAAACTACATCAACACAGATAATGAGTAGTCCTAGCTGCTTAG AACGCTGGGCCAAGGGAACCCCAAAATCAAGTAAAAAATCCATGTCAACTCCTTCAGCAGGTTGTGACAGGAAGCTGCGGTCAAAGTCACAAGATAAGCA AAAAGCTACCGAGTCTAGTGGTAAGCAAAAAGTTAGTGAGTCTAGTGGAAAGTCAGCTAATGTTAGCTCTGATGGGGAGAAACGAAGAAGAATAAAAAAA AGAAGAAGCAAGGAAGCTGTGACAAATGAGTACAAACGGATCAGGTCTCACCTACGGTATCTGCTGCAGCGGATGAAATTTGAGCAAAGCCTGATTGTTG CGTATTCTGGTGAAGGCTGGAAAGGGCAAAATTTAGAAAAGTTGAAACCAGAGAAGGAGCTGCAGCGAGCCTCATCTGACATTTTTCGTCTCAAAACAAA AGTAAGGGAATTATTTAAACACATCGACTCCTTGTGTGCTGAAGGAAGCTTTCCAGCATCTTTGTTCGATTCCGATGGAGAGATTAGTAGCGAGGATATA TATTGTGCAAAATGTCAATCCAAAGAAGTTACGTTGGAAAATGATATTATACTTTGTGATGGTGCTTGTGACCGTGGATTCCACCAATTCTGTTTGGTAC CTCATTTGTTGAATGAAAACATGTCCTCTGACTTCTGTTTGGTTTGCCAACAGTTCCTCCCGATGACGAGGGCTGGCTGTGCCCTGGATGTGATTGCAAA GTTGATTGCCTTGGTTTTTTTAATGACTACCTTTGAACCAATCTATCTATTGGTGATAGCTGGGAGGGAAATGATGCATTCTCTGGATTTATCTATGAAA CATGAGCTCAAAGTGTTCCCTGAAGCTGCAGCAACAGTATCTGCACCAGATATAGGTTCCAATTTTGGACTTCCCTCCGATGACTCAGATGATGGTGATT ATGGCCCGGATGATCCTGAACTCGAGCAGAAGAATGAAGTAGATGGATCAGGTTCTGATGAATCTGCCTTCACTTCTGCATCCGAGGAACTTGGTGTTTC CAACAATGAGAAGCTCTTGGGCCTTCCATCTGACGACTCAGAAGATGATGATTATAACCCCAATGATCCGTATCTTGATGAGACAGTGAAGGAGGAAGAT GAAAGCTCGGGCTCTGATTTTTCATCTGATTCTGAGGATCTAGATGCTGTTCTTGAGAACGATGAGCAGCCCAGAGCGGAAGGAAACCTTTCATTTGCTC AACATGGTAAAACGAAGAATCGGTCATTAAACAATGAGCTATTATCAACGTCAAATCCAGTCGATGGTGTTGATGGTTCCCACATTGACAAGTACTTAGG TCTTCCATCTGACGACTCCGAAGATGACGACTATAATCCCGATGGTCCGTATCCTGATGGGACAATGAAGCAGGAAAGCTCTGGTTCCGATTTTTCATCT GATTCTGAGTATCTGGATGCAGTTCATGAGAATGATGAGTTGCCTGGAGCTAATGGAAACCATTCAAATGTTGAACTTAATGGGAAGACGAATCAGTCAT TAACTAATGAGCTATCATCAACATCAACGGCAGTTGAGGGCATGGATGGTTCCCTGTCCTTTACCAGGAAAAGGAACGTTGACAGACTGGACTATAAAAA GCTGTATGATGAAACATATGGAAATGGTTCATCTGATTCAAGTGATGATGAAGATTATACTGGTACTGTCCGGCAAAAGGTTAGGAAACTTTCCACTGAG ACTGCTCCATTCTCAACAAGTAGAACAGATGTTGTTGGCAAGTCTGCGCTGAAATCTTTTGAAATAAAGCAATCCCTTGGGGACAATGACGACCAAGGCT CTTCTCTGTCAACTCCTATTCGTAAAAGAAATGCAATCTATAAGAAACTCGGGGAAGCAGCGACCCAGAGGCTTCGCGAATCCTTTGTGGAGAATCGGTA TCCTAACCATTCCACAAAAGAGAAGTTGGCTAAAGAGCTAGAACTTACAGTCCGTCAGGTTGGCAAATGGTTCGAGAATGCTCGTTGGAACTATAACCAT CCAGCTGATAGGGCAAGTAAACGTTCTTCTGCAAATGATAATCCTGTAGTCCCTTCAACGGACGACAACAAACAGTTTAATGTCGGTCAAAATGAGGATA CAGTAAAGAAAGATGACGATGTTGCTGCAAAATTGCAGGGACAAGTAGCCTCTAAATTAGTATCAAGAGGTAGAAAACGTAAACCGGATAAACAAATAAT GGGAGAGGAAGCAATTTCTGGACAGCGAGTTCACCAATGA
AA sequence Show only first row Show all	>Lus10024826 pacid=23178890 polypeptide=Lus10024826 locus=Lus10024826.g ID=Lus10024826.BGIv1.0 annot-version=v1.0 MSQTSPHSDDQKSTNCEQFKTTSTQIMSSPSCLERWAKGTPKSSKKSMSTPSAGCDRKLRSKSQDKQKATESSGKQKVSESSGKSANVSSDGEKRRRIKK RRSKEAVTNEYKRIRSHLRYLLQRMKFEQSLIVAYSGEGWKGQNLEKLKPEKELQRASSDIFRLKTKVRELFKHIDSLCAEGSFPASLFDSDGEISSEDI YCAKCQSKEVTLENDIILCDGACDRGFHQFCLVPHLLNENMSSDFCLVCQQFLPMTRAGCALDVIAKLIALVFLMTTFEPIYLLVIAGREMMHSLDLSMK HELKVFPEAAATVSAPDIGSNFGLPSDDSDDGDYGPDDPELEQKNEVDGSGSDESAFTSASEELGVSNNEKLLGLPSDDSEDDDYNPNDPYLDETVKEED ESSGSDFSSDSEDLDAVLENDEQPRAEGNLSFAQHGKTKNRSLNNELLSTSNPVDGVDGSHIDKYLGLPSDDSEDDDYNPDGPYPDGTMKQESSGSDFSS DSEYLDAVHENDELPGANGNHSNVELNGKTNQSLTNELSSTSTAVEGMDGSLSFTRKRNVDRLDYKKLYDETYGNGSSDSSDDEDYTGTVRQKVRKLSTE TAPFSTSRTDVVGKSALKSFEIKQSLGDNDDQGSSLSTPIRKRNAIYKKLGEAATQRLRESFVENRYPNHSTKEKLAKELELTVRQVGKWFENARWNYNH PADRASKRSSANDNPVVPSTDDNKQFNVGQNEDTVKKDDDVAAKLQGQVASKLVSRGRKRKPDKQIMGEEAISGQRVHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10024826 [exp]	0	1
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	3.5	0.9231
AT2G47210	MYB		myb-like transcription factor ...		Lus10015735 [exp]	5.5	0.9066
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	5.6	0.9234
AT3G55060			unknown protein		Lus10030304 [exp]	7.3	0.8821
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	7.5	0.9150
AT5G43100			Eukaryotic aspartyl protease f...		Lus10019309 [exp]	8.1	0.8761
AT2G48060			unknown protein		Lus10027982 [exp]	8.8	0.8670
AT1G42440			unknown protein		Lus10030752 [exp]	12.7	0.8972
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003354 [exp]	15.0	0.9079
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10024525 [exp]	16.6	0.8744

Compare expression of checked genes

Lus10024826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.