Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48540 39 / 0.0004 receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018742 [exp] 273 / 9e-96 ND 39 / 0.001 Lus10024825 [exp] 114 / 5e-33 ND / Lus10012369 [exp] 38 / 0.001 AT4G11470 42 / 6e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G024000 [exp] 45 / 4e-06 AT4G23180 489 / 4e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023700 [exp] 45 / 6e-06 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024140 [exp] 42 / 9e-05 AT4G23180 497 / 3e-168 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023876 [exp] 41 / 0.0002 AT4G23180 489 / 5e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023964 [exp] 40 / 0.0002 AT4G23180 401 / 6e-132 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10024827 pacid=23178980 polypeptide=Lus10024827 locus=Lus10024827.g ID=Lus10024827.BGIv1.0 annot-version=v1.0 ATGGCTTATAACTCTTGCAAACTAGTAGTCCTCATATTCGTCGCTGCCGGCGTGATTCTGCCGCTGGGAACGGCATATGACGGCGACTTTAAGTACTTCG GATGCAACGAGAAGTCGGGCAAGATTCCGGCGTGCGGCGGTTACGCCAGCGGCATAAAGGAAGCTCTGACCAAAGTGACGGAGTGCACGAAGCCAGGTGT GTGGGACGGGAGCTGCAAAGTCAAAGTTCCTGATGACTCGGAGAAAGCCAGAGTGTTTGGACATGGGCAGTGCAGGGGTGATGGCGGTAATGTACTGAGG CTGCCGGTGAAAATGGCGGTCGAGAGTGAGTGCACAGATTGTTTAAAGGCTGCCGCTGGTTACCTTCTTTCCAACTGTAATTATACGGAGGCTGATGTTG TTTATGATCTATGTTCTATGAGCTACAGCTACAGAGACCTTTGA
AA sequence Show only first row Show all	>Lus10024827 pacid=23178980 polypeptide=Lus10024827 locus=Lus10024827.g ID=Lus10024827.BGIv1.0 annot-version=v1.0 MAYNSCKLVVLIFVAAGVILPLGTAYDGDFKYFGCNEKSGKIPACGGYASGIKEALTKVTECTKPGVWDGSCKVKVPDDSEKARVFGHGQCRGDGGNVLR LPVKMAVESECTDCLKAAAGYLLSNCNYTEADVVYDLCSMSYSYRDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024827 [exp]	0	1
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10029486 [exp]	2.0	0.5849
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10023445 [exp]	4.7	0.7091
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008706 [exp]	18.8	0.5952
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	22.0	0.5523
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	23.5	0.5523
AT5G02070			Protein kinase family protein ...		Lus10020667 [exp]	23.7	0.5744
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	24.2	0.5877
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	24.9	0.5523
					Lus10033017 [exp]	25.9	0.5189
					Lus10004437 [exp]	26.3	0.5523

Compare expression of checked genes

Lus10024827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.