Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14640 172 / 5e-56 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G22930 172 / 2e-55 CML11 calmodulin-like 11 (.1) AT3G43810 155 / 5e-49 CAM7 calmodulin 7 (.1) AT2G41110 154 / 1e-48 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 154 / 1e-48 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 154 / 1e-48 ACAM-3, CAM3 calmodulin 3 (.1) AT5G37780 153 / 2e-48 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 153 / 2e-48 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G21274 153 / 2e-48 ACAM-6, CAM6 calmodulin 6 (.1) AT3G51920 152 / 8e-48 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014709 [exp] 188 / 3e-62 AT4G14640 162 / 4e-52 calmodulin-like 8, calmodulin 8 (.1) Lus10014708 [exp] 187 / 9e-62 AT4G14640 163 / 2e-52 calmodulin-like 8, calmodulin 8 (.1) Lus10004088 [exp] 186 / 3e-61 AT4G14640 159 / 5e-51 calmodulin-like 8, calmodulin 8 (.1) Lus10039391 [exp] 178 / 4e-58 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10027283 [exp] 155 / 5e-49 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 155 / 5e-49 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 155 / 5e-49 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10041288 [exp] 155 / 5e-49 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10001775 [exp] 154 / 2e-48 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215700 [exp] 191 / 2e-63 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.002G047300 [exp] 174 / 7e-56 AT3G22930 171 / 3e-54 calmodulin-like 11 (.1) Potri.010G080900 [exp] 171 / 1e-55 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.005G052800 [exp] 171 / 3e-55 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 167 / 6e-54 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.013G040300 [exp] 162 / 5e-52 AT3G22930 210 / 1e-70 calmodulin-like 11 (.1) Potri.012G041000 [exp] 158 / 2e-50 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.015G032600 [exp] 157 / 7e-50 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.001G222200 [exp] 156 / 4e-49 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.006G026700 [exp] 155 / 5e-49 AT3G43810 300 / 2e-106 calmodulin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10024830 pacid=23178926 polypeptide=Lus10024830 locus=Lus10024830.g ID=Lus10024830.BGIv1.0 annot-version=v1.0 ATGGCCGCCGGCGCCGTGGAAGCAGCAGCTATGCTGGAAGACCAGATTCAGGAGTTCCGGGAGGCCTTCTGCCTGATCGACCGGAACAGCGACGGTGGAT TTATCACGGTGGAGGAGCTGGCAATGTTGATCCAGACAGTGGACGCACACCCTAAGAAGCAGGAAGTTCGAGACATGATCTCCGAGGTCGACTTTCTGGG CAACGAGGCCATGAGTTTCAATGATTTCTTGAATGTCATGGCTAGGAAAATGGAGGAAAATGCTGGAGATGAACTGAAGGAAGCTTTCAAAGTGTTTGAT AGGGATCAAGATGGTTTCATTTCTCCTAGCGAGCTAAGGGAGGTGATGATGGATATGGGGGAGAGGCTAACGGAAGAAGAAGCAGAGCATATGATTCGAG AGGCCGATTTCGATGGAGATGGCAAAGTTAATTATGACGAATTCGCTAGGATGATGTCCTCCTTTTAA
AA sequence Show only first row Show all	>Lus10024830 pacid=23178926 polypeptide=Lus10024830 locus=Lus10024830.g ID=Lus10024830.BGIv1.0 annot-version=v1.0 MAAGAVEAAAMLEDQIQEFREAFCLIDRNSDGGFITVEELAMLIQTVDAHPKKQEVRDMISEVDFLGNEAMSFNDFLNVMARKMEENAGDELKEAFKVFD RDQDGFISPSELREVMMDMGERLTEEEAEHMIREADFDGDGKVNYDEFARMMSSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10024830 [exp]	0	1
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10038492 [exp]	6.0	0.7909
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013383 [exp]	6.6	0.7987
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10015633 [exp]	11.7	0.8360
					Lus10003479 [exp]	12.1	0.7772
AT4G02920			unknown protein		Lus10027996 [exp]	25.0	0.7715
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10018143 [exp]	34.2	0.7571
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10021930 [exp]	41.5	0.6925
AT4G39230			NmrA-like negative transcripti...		Lus10026351 [exp]	51.4	0.7465
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025514 [exp]	84.7	0.7179
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	174.1	0.6996

Compare expression of checked genes

Lus10024830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.