Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63400 251 / 3e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT3G56070 196 / 6e-59 ROC2 rotamase cyclophilin 2 (.1.2) AT2G21130 194 / 3e-58 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 191 / 3e-57 ROC1 rotamase CYP 1 (.1) AT4G34870 186 / 2e-55 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G16600 186 / 4e-55 ROC3 rotamase CYP 3 (.1.2) AT3G55920 184 / 9e-54 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G29960 181 / 5e-53 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 174 / 1e-50 ROC7 rotamase CYP 7 (.1) AT2G15790 179 / 2e-50 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018746 [exp] 353 / 1e-112 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10020992 [exp] 197 / 5e-57 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10007579 [exp] 188 / 4e-56 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10022012 [exp] 188 / 5e-56 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 187 / 2e-55 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10023860 [exp] 192 / 3e-55 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10017258 [exp] 186 / 4e-55 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10012167 [exp] 183 / 2e-54 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10018238 [exp] 181 / 4e-53 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215800 [exp] 270 / 6e-81 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.002G047200 [exp] 261 / 9e-78 AT3G63400 229 / 1e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.009G130100 [exp] 199 / 4e-60 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G240200 [exp] 196 / 4e-59 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 195 / 1e-58 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.019G014396 [exp] 189 / 2e-56 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.004G168800 [exp] 184 / 8e-55 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.004G144300 [exp] 187 / 3e-53 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.005G135500 [exp] 186 / 4e-53 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.009G106200 [exp] 186 / 8e-53 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10024831 pacid=23178836 polypeptide=Lus10024831 locus=Lus10024831.g ID=Lus10024831.BGIv1.0 annot-version=v1.0 ATGAGCAAGAAGAAAAACCCGTCTGTATATTTTGATGTATCGATCGATAGAGGTCCCGTGGAAAGAATTGTTATTGAGCTTTTTGCGGATGTTGTTCCAA AGACTGCAGAAAATTTCAGGGCGCTGTGCACAGGGGAGAAGGGCACTGGGAGTACTACTGGGAAACCTCTGCATTACAAAGGAACTTCTTTCCATCGAAT AATTAAAGGGTTCATGGCACAGGGTGGTGACTTTTCAAAGGGAAACGGAACTGGTGGAGAAAGCATCTATGGAGGGAAATTTTCAGATGAGAACTTCAAG TTAAAGCATGATGGACCGGGCTTTCTTTCAATGGCAAATAGTGGTCCAAACACCAATGGTTCTCAATTTTTCATTACCTTTAAGAGCCAACCTCACCTTG ATGGGAAACATGTTGTTTTTGGGAAGGTTGTTAAAGGATTGGATATACTGAAGAAAATTGAACAGGCAGGAACGGCTAAAGGAGACCCTCTTCAATCTGT GAGAATTGCAGACTGTGGTGAAACTTCTGAGAGTTCTCATGTTGTGGTGAAGGATACAGGGAAAGATAAAAAATTAGCAAAGGTCACTTCTGATGATAGC TCCGAAGGAGATATTAAACGCGGACGTAAGAAGTTGTTGAAGGATAGAAGGAAGAGGAGAAGAAAGAGATACTCTTCATCCGATTCATACAGTTCTGATT CCGAGTCAGAATCTCCAGACTCAGGTTCTGAATCTTCAGACTCAGATTCATTGTCACTTGATTCAAGTTCTAGTGATGGGAGACGCAAGAAGAGGAAGTA TTCGAAAAGAGGTAAACGACATGGCAAGAGGAAAAAGAGTGGCAGGAGAAGTGATAAGAAGAAGAGTAGGCGTGACAAAAGATCCAGGCGCAAGTCGAAA AGGAGTTCTGATAGCTCTAGTGATTCTGCATCTGAGAGTAGCAACAGCAGTTCTGAAGATGATAAAGCTGATCGCCATATTTCTCGTAAAAGCAGCAAGT CTACTGTTGCTGACAAGGCGGACAGTCTAGAGAAAGCTAAGGGAGACAAAGGGAATGAAAAACAGAAGATGAGTGAAGTGAATTCTCAACACGAAGAAGG AGAATTGTCTCCAAAGAATGGAAACCTTCTGAATGGGAATGATTCCAAATCTGACAGAAACATTAAGCGGAGCTCTTATTCTGACAACTCAGACAAATCT AGGAGTGTCACTCCAAGCCCTCCAAGGAGGCCAAACAACAACCATAGGATTAAACGAGGGGGGAGTCCTGAAAAAACTTCTCCAATTCCAAGGATTTCAA GGAGTCCAGTGCGCAGTCCTGCTGGTAGGGCTCCTGAACCTCTTACCTCCAACCAAGGCAGGAATGTTTCAAGAAGCCCATCCCCAAATGCTGTTCCGAA ACGCGTTAGAAAAGGAAGAGGCTTCACTGAACAGTATTCGTTTGCTCGTCGATACCGTACCCCTTCTCCTGAGGGTTCACCTCCTAGAAGGTCTTTCTAC TACAGCGGTAGAAATGTCAATGATAGGAACCGTGATAGGTACTCAGGCAACCGGAACTATCCGGCACGCTCATCATATGGACGGTACAGAAGCCCACTAA GAGGCAGGAGTCCACCTAGATATGGAAGTCGGAGAAGTCGAAGTAGGAGCAGATCTCGCAGCCCAAGAAACTATCGCGAGCGGAACAGAGGTCGCAGCAG AAGCCAGAGCCCGGTTCAAAGTCCTAGTCCAAAAGACAAGCGGCCTCCTGTCAGTGACGGTTTGAAATCTCGTCTCGGCCCTCGAATTGATGATGACCAA TCAAGGAGGAGTGAAGGAAGATTAAGGTCAAGGAGCAGGTCATCTTCCCTTTCGAAATCTCCAGATGCTGCACCACCAAAACGGCGTGGTAGAACAACTA GTAGGTCAAGGTCGAGCTCGCTGTCAGGAGAACAGCAAGGTCTAGTTTCATATGGGGATCCCAGCCCTGACAAGTAA
AA sequence Show only first row Show all	>Lus10024831 pacid=23178836 polypeptide=Lus10024831 locus=Lus10024831.g ID=Lus10024831.BGIv1.0 annot-version=v1.0 MSKKKNPSVYFDVSIDRGPVERIVIELFADVVPKTAENFRALCTGEKGTGSTTGKPLHYKGTSFHRIIKGFMAQGGDFSKGNGTGGESIYGGKFSDENFK LKHDGPGFLSMANSGPNTNGSQFFITFKSQPHLDGKHVVFGKVVKGLDILKKIEQAGTAKGDPLQSVRIADCGETSESSHVVVKDTGKDKKLAKVTSDDS SEGDIKRGRKKLLKDRRKRRRKRYSSSDSYSSDSESESPDSGSESSDSDSLSLDSSSSDGRRKKRKYSKRGKRHGKRKKSGRRSDKKKSRRDKRSRRKSK RSSDSSSDSASESSNSSSEDDKADRHISRKSSKSTVADKADSLEKAKGDKGNEKQKMSEVNSQHEEGELSPKNGNLLNGNDSKSDRNIKRSSYSDNSDKS RSVTPSPPRRPNNNHRIKRGGSPEKTSPIPRISRSPVRSPAGRAPEPLTSNQGRNVSRSPSPNAVPKRVRKGRGFTEQYSFARRYRTPSPEGSPPRRSFY YSGRNVNDRNRDRYSGNRNYPARSSYGRYRSPLRGRSPPRYGSRRSRSRSRSRSPRNYRERNRGRSRSQSPVQSPSPKDKRPPVSDGLKSRLGPRIDDDQ SRRSEGRLRSRSRSSSLSKSPDAAPPKRRGRTTSRSRSSSLSGEQQGLVSYGDPSPDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10024831 [exp]	0	1
AT1G69070			unknown protein		Lus10019174 [exp]	8.6	0.9207
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	9.4	0.9175
AT4G09730		RH39	RH39 (.1)		Lus10017781 [exp]	9.9	0.9049
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10017896 [exp]	10.6	0.9076
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	11.4	0.9175
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001586 [exp]	14.0	0.9120
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Lus10026157 [exp]	16.0	0.9075
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009050 [exp]	17.7	0.8907
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	17.9	0.9162
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10021402 [exp]	18.5	0.9107

Compare expression of checked genes

Lus10024831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.