Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63410 480 / 3e-171 VTE3, APG1, IEP37, E37 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G57300 43 / 0.0002 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018747 [exp] 629 / 0 AT3G63410 494 / 1e-174 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014711 [exp] 445 / 3e-158 AT3G63410 424 / 3e-150 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003095 [exp] 141 / 1e-41 AT3G63410 136 / 1e-40 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004090 [exp] 100 / 2e-25 AT3G63410 98 / 6e-25 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013038 [exp] 42 / 0.0003 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10029124 [exp] 42 / 0.0006 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10000179 [exp] 40 / 0.001 AT5G57300 342 / 3e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G047100 [exp] 548 / 0 AT3G63410 508 / 0.0 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G215900 [exp] 532 / 0 AT3G63410 492 / 3e-176 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G159400 [exp] 508 / 0 AT3G63410 461 / 6e-164 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G188600 [exp] 41 / 0.0008 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10024832 pacid=23178950 polypeptide=Lus10024832 locus=Lus10024832.g ID=Lus10024832.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCGATTGTGAACGGGGCTGAAAGCTTCGCGCTCCTTAGAAGAACCAATGGCGTAGCCCCAAGGGGATTAGGTTTCGTGGGTTCAGATTCCC ACGGCAAGAACTTCCCTAAATTGAACACGCTATCCATGAATAGAATCCCTAGGATCAGTACTACTAGCAGAAGAACTACAACAATGGCTCCCATTACTCC CAAGTGTAGCTTATCATCATCTGCTGCATCATCATCATCCTCCAGACCGGCTTCCCAGCTTAGGCTTATCCAGCACAAGCAGGAGGCATTTTGGTTCTAC AGATTCCTGTCCATTGTGTATGACCATGTGATAAACCCGGGTCACTGGACCGAGGACATGAGGGACGATGCCCTCGAGCCTGCTGACCTCAGCGACAGGA GAATGCTTGTGGTGGATGTTGGTGGTGGCACTGGCTTCACCACTCTGGGGATTGTGAAGCATGTTGATGCGAAGAATGTTACGATTCTCGATCAGTCTCC TCATCAGCTAGCTAAGGCTAAGGAGAAGGAGCCTCTTAAGGATTGTAAGTTTGTGCTTGGTGATGCTGAAGACTTGCCCTTTAAGACTGATTATGCAGAC AGATATGTCTCTGCTGGGAGCATTGAGTACTGGCCGGACCCACAGCGTGGCATCAGAGAGGCATACAGGGTCTTGAAGCTGGGAGGCAAAGCCTGTTTGA TCGGTCCGGTTTATCCTACATTTTGGCTGTCTCGCTTCTTTGCGGATGCCTGGATGCTCTTCCCCAAGGAAGAAGAGTACATCGAGTGGTTTACCAAGGC TGGGTTTAAAGATGTTCAGCTGAAGAGGATTGGCCCAAAGTGGTATCGCGGTGTTCGTCGACATGGGCTCATCATGGGATGTTCTGTCACGGGTGTTAAA CCTGCATCTGGAGATTCTCCTTTGGAGCTTGGTCCGAAGGCTGAGGATGTGTCAAAGCCTGTAAAACCATTTGTTTTCCTGGCGCGGCTGATTTTGGGGG CAATGGCTGCAACATATTATGTGCTGGTACCAATCTACATGTGGATCAAAAACCTAGTAGTCCCCGAAGGAATGCCGATATGA
AA sequence Show only first row Show all	>Lus10024832 pacid=23178950 polypeptide=Lus10024832 locus=Lus10024832.g ID=Lus10024832.BGIv1.0 annot-version=v1.0 MASSIVNGAESFALLRRTNGVAPRGLGFVGSDSHGKNFPKLNTLSMNRIPRISTTSRRTTTMAPITPKCSLSSSAASSSSSRPASQLRLIQHKQEAFWFY RFLSIVYDHVINPGHWTEDMRDDALEPADLSDRRMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKEKEPLKDCKFVLGDAEDLPFKTDYAD RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADAWMLFPKEEEYIEWFTKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVK PASGDSPLELGPKAEDVSKPVKPFVFLARLILGAMAATYYVLVPIYMWIKNLVVPEGMPI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10024832 [exp]	0	1
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10038638 [exp]	1.4	0.9511
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10037912 [exp]	7.0	0.9142
AT3G15810			Protein of unknown function (D...		Lus10016666 [exp]	7.6	0.8958
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10002315 [exp]	8.7	0.9187
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10004555 [exp]	9.9	0.9112
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029752 [exp]	11.3	0.9173
AT3G61870			unknown protein		Lus10012617 [exp]	12.8	0.9163
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10014093 [exp]	13.4	0.9066
AT4G14870		SECE1	secE/sec61-gamma protein trans...		Lus10006118 [exp]	13.8	0.8643
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10002040 [exp]	14.3	0.9151

Compare expression of checked genes

Lus10024832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.