Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 507 / 7e-178 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) AT3G24290 96 / 5e-21 AMT1;5 ammonium transporter 1;5 (.1) AT3G24300 91 / 3e-19 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT4G13510 74 / 9e-14 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT1G64780 74 / 1e-13 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G28700 67 / 9e-12 AMT1;4 ammonium transporter 1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018748 [exp] 883 / 0 AT2G38290 557 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10003093 [exp] 795 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10014713 [exp] 793 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 636 / 0 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 636 / 0 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10001776 [exp] 605 / 0 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10020248 [exp] 555 / 0 AT2G38290 481 / 7e-167 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10025692 [exp] 509 / 3e-178 AT2G38290 639 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10028397 [exp] 473 / 8e-165 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G047000 [exp] 717 / 0 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G216000 [exp] 691 / 0 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.013G040401 [exp] 636 / 0 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 601 / 0 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G247800 [exp] 517 / 0 AT2G38290 462 / 1e-160 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G106000 [exp] 506 / 1e-177 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.001G305400 [exp] 503 / 7e-176 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G102800 [exp] 502 / 1e-175 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 492 / 8e-172 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G000800 [exp] 486 / 2e-169 AT2G38290 568 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10024833 pacid=23178865 polypeptide=Lus10024833 locus=Lus10024833.g ID=Lus10024833.BGIv1.0 annot-version=v1.0 ATGGCGGACGTCCTGCCACTAAACCTCGCCACCGACGAGGGAAGCCCGGACTGGCTCAACAAAGGCGACAACGCATGGCAGCTCACCGCCGCTACGCTCG TTGGGATGCAGAGTGTCCCGGGCTTGGTAATCCTCTACGGAAGCATCGTCAAGAAGAAATGGGCGGTGAACTCGGCGTTCATGGCGCTCTACGCCTTCGC CGCCGTCTTGATCTGCTGGGTCGGGTGGGGTTACCAGATGGCGTTCGGAGACCACTTCGTTCCCTTTTTGGGGAAGCCTGACGTGGCGCTCGATCAGAAG TTTCTGCTGAGCAGGACGTTTGTTGGGTACTTGCCGAACGCGACGATGATTTATTTCCAGTTTGTTTTCGCGGCGATTACTTTGATTCTGATCGCCGGTG CTTTGCTTGGGAGGATGAATTTCCATGCGTGGATGATTTTTGTTCCGCTTTGGCTGACGTTTTCGTACACGGTGACTGCTTATAGTATTTGGTGTCCTAC TGGGTGGCTTTATAAGAAGGGGATTATTGATTACTCCGGCGGGTATGTTATACACTTGTCCTCCGGCGTCGCAGGGTTCACCGCCGCCTACTGGGTGGGA CCGAGGGCGAGCAAAGACAGGGAGAGGTTCCCGCCGAACAACATACTCCTGATGTTGGCCGGAGCAGGGCTACTGTGGATGGGATGGACAGGATTCAACG GTGGAGATCCTTACACTGTTAGCATTGATGCTTCTCTCGCCGTACTCAACACTCACGTCTGTACTGCCACCAGCTTGCTTGTGTGGCTTCTTCTTGACAT CATGTTCTTCGGCAAGCCCTCCGTCATCGGAGCCATCCAGGGCATGATCACCGGCCTCGTCTGCATCACTCCCGCCGCCGGAGTTGTACAAGGATGGGCG GCGATCCTGATGGGAATAATGTCGGGAAGCATCCCATGGTACACAATGATGGTCCTCCACAAGAAAATATCCCTCCTCAAGCACATCGACGACACAATGG CAATCTTCCACACCCACGCCGTCGCCGGCAGCCTCGGCGGGATCCTCACAGGAATCTTCGCCGAGCCCAAGCTTTGCCGCATCTTCTACCTCGTCCCGGA CTGGCAACACTACATCGGCCTCCTCAACGGCTTCCACAACGGCACCCCGGGGGCCGGGTTCAAGCAGCTGGGAATCCAGCTCCTCGGGATCCTCTATGTC GTCTGCGTCAACGTCGTGATCACCAGCGTCATTTGCTGGCTGATTAAGTTCGTGGTGCCGTTGCGGCTGTCGGAGGAGGAGCTCAGCGTCGGAGATGACG CCATCCACGGAGAAGAGGCGTACGCGTTGTGGGGAGATGGGGAGAAGTATGAGTCGGCGAGTAGGCATACTTCGTTTTACGGGGCTGATCAGGATATTCC GCCCCCGGGGAAGGGTGATTCCGCCGTCGGTGGAGGACAGGTTGAGATGGCCTGA
AA sequence Show only first row Show all	>Lus10024833 pacid=23178865 polypeptide=Lus10024833 locus=Lus10024833.g ID=Lus10024833.BGIv1.0 annot-version=v1.0 MADVLPLNLATDEGSPDWLNKGDNAWQLTAATLVGMQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLICWVGWGYQMAFGDHFVPFLGKPDVALDQK FLLSRTFVGYLPNATMIYFQFVFAAITLILIAGALLGRMNFHAWMIFVPLWLTFSYTVTAYSIWCPTGWLYKKGIIDYSGGYVIHLSSGVAGFTAAYWVG PRASKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYTVSIDASLAVLNTHVCTATSLLVWLLLDIMFFGKPSVIGAIQGMITGLVCITPAAGVVQGWA AILMGIMSGSIPWYTMMVLHKKISLLKHIDDTMAIFHTHAVAGSLGGILTGIFAEPKLCRIFYLVPDWQHYIGLLNGFHNGTPGAGFKQLGIQLLGILYV VCVNVVITSVICWLIKFVVPLRLSEEELSVGDDAIHGEEAYALWGDGEKYESASRHTSFYGADQDIPPPGKGDSAVGGGQVEMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024833 [exp]	0	1
AT4G35980			unknown protein		Lus10009388 [exp]	2.0	0.8741
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	4.7	0.8601
AT5G07980			dentin sialophosphoprotein-rel...		Lus10034692 [exp]	8.5	0.8408
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	8.7	0.8366
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	9.3	0.8541
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10027421 [exp]	11.0	0.8279
AT5G53880			unknown protein		Lus10000796 [exp]	15.0	0.8340
					Lus10008292 [exp]	15.0	0.7860
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	17.7	0.8363
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10037705 [exp]	24.4	0.8092

Compare expression of checked genes

Lus10024833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.