Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43820 281 / 2e-89 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT2G43840 278 / 3e-88 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT1G05680 253 / 1e-78 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05675 253 / 2e-78 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 251 / 6e-78 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT2G31790 251 / 9e-78 UDP-Glycosyltransferase superfamily protein (.1) AT1G24100 206 / 1e-60 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT1G05530 177 / 9e-50 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1) AT4G15480 177 / 1e-49 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT2G23260 176 / 3e-49 UGT84B1 UDP-glucosyl transferase 84B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020559 [exp] 547 / 0 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009412 [exp] 309 / 4e-100 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 301 / 5e-97 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10008742 [exp] 276 / 2e-87 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10024486 [exp] 268 / 4e-84 AT1G05680 389 / 4e-132 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10006353 [exp] 258 / 3e-80 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006351 [exp] 252 / 7e-80 AT1G05680 315 / 9e-106 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10006352 [exp] 255 / 4e-79 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10014148 [exp] 245 / 2e-75 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G140500 [exp] 331 / 1e-108 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.007G117200 [exp] 291 / 3e-93 AT2G43840 461 / 1e-160 UDP-glycosyltransferase 74 F1 (.1.2) Potri.001G389200 [exp] 263 / 4e-82 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032300 [exp] 259 / 5e-81 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G032500 [exp] 257 / 4e-80 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.014G175000 [exp] 254 / 6e-79 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.007G140300 [exp] 251 / 6e-78 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 251 / 2e-77 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032733 [exp] 251 / 2e-77 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140600 [exp] 244 / 1e-75 AT2G43840 375 / 2e-127 UDP-glycosyltransferase 74 F1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10024834 pacid=23178919 polypeptide=Lus10024834 locus=Lus10024834.g ID=Lus10024834.BGIv1.0 annot-version=v1.0 ATGGGTGACACTATAAATAGTACCACTCTATGGCAGCAGACACAAACATCAACCAAAACAGTGATAGCTAAGAGATCCAAGGTACAAAATGGAAAGAAAA TCCAGCAAGGCATGCCACGTCATCCTCCTCCCATATCCAGGCCAAGGCCACATCAACCCAATGACCGAATTCGCCCGTCGCTTAGTCTCACGTGGCATAA GAGCCACCTTAGTCACCACCGTCTTCATCTACAACTCCCTAAGCTGGGCCCCACAGTCGGGCCAGACTCCTCCGTCCACCATCACGTCATCTCCGACGGA TTCGACGACAGCGGCCGTTACGGCGAAGGCAGGACCTTGCCGGAGTATCTCGAGACAGCAAAAGAAGTGGGGTCCAGGTCACTGTCGGAGCTTATAGAGA GAGGTACAAGACTTCGTCGTCGTCGTCTTGTGGTCAACCTGTTGACTGTATGGTGTACGATCCGTTTTTGCCGGGGGCGCTTGACGCGAAGGAGCACGGG CTCTATGCGGCGCCGTTTTTTACCCAGCCGTGTGCTGTTGACTATATTTATTATAATGTCTGGGCCGGGTCGTTGGGTTTGCCCGTGGAGCGTTGGCCTG TCGAGATACCCGGGCTGCCGTTGCTGGAGGCGAGTGATGCGCCGTCGTTTCTTTTTGATCCGGTGTCGTCTAAGGATTTCCTTGGTTTGTTTGGTGAACA AGTTTTCTAATGCTGAGAGAGTGGATTGCTTGCTGATCAATACCTTCTATGAGCTGGAGAAACAAGTTGTGGACACATTCTCAAAGATATGTCCGATTTT TTCGATCGGTCCAACCATTCCCTCCAATTACTTAACCTCCAAACCCTCCGTGATTGAGGGCGGCGACTATGACCTCGATCTCTTTGAGCACGATGAGTCC ATCCCCATAAAATGGCTCTCCAACAAGCCGCTGAGCTCAGTCATCTATGTGGCATTTGGGAGGCGGGCAAGCTTGACTCACACACAGATGGAAGAACTTG TCCTGGGCCTCAAGCAAACGGGCCACTATTTCTTATGGGTCGTTAGAGAGACAGAACAAGCCAAGCTTCCGGACCCATTCCTCAAAAGCCCGAGAGACGA CAAAGTTCTAGTGGTGAAATGGAGCCCTCAGCTGAAGATTCTAGCGAACAAGGCGATTGGTTGTTTCTTGACTCACTGTGGTTTGAACTCAACGATAGAA GCATTAAGCTTGGGAGTTCCCATGGTAGCAATGCCTATATGGAGTGATCAGCATGCCAATGCATCGTTCGTCGAGAAGGTTTGGAGAGTCGGTGTTAGGG TTAGGGTTTCAGAGAAGAATGGAGTTGTGGGCAGGGATGAAATCGAGAAGTGTGTTAGGGAAGTGATGGATGGTGGGATGGAGATGAAGAAGAATGCTAT AAAATGGAGGGAGGTTGTTGTGAAAGCCGTTGAGGAAGGTGGTTCTTCGTTTAGGAACATCGATGACTTCGTCACCAAGATCATGACCCACACCAAAAAG GTTCGAAATAGGATGCTGATCAATAGCTAG
AA sequence Show only first row Show all	>Lus10024834 pacid=23178919 polypeptide=Lus10024834 locus=Lus10024834.g ID=Lus10024834.BGIv1.0 annot-version=v1.0 MGDTINSTTLWQQTQTSTKTVIAKRSKVQNGKKIQQGMPRHPPPISRPRPHQPNDRIRPSLSLTWHKSHLSHHRLHLQLPKLGPTVGPDSSVHHHVISDG FDDSGRYGEGRTLPEYLETAKEVGSRSLSELIERGTRLRRRRLVVNLLTVWCTIRFCRGRLTRRSTGSMRRRFLPSRVLLTIFIIMSGPGRWVCPWSVGL SRYPGCRCWRRVMRRRFFLIRCRLRISLVCLVNKFSNAERVDCLLINTFYELEKQVVDTFSKICPIFSIGPTIPSNYLTSKPSVIEGGDYDLDLFEHDES IPIKWLSNKPLSSVIYVAFGRRASLTHTQMEELVLGLKQTGHYFLWVVRETEQAKLPDPFLKSPRDDKVLVVKWSPQLKILANKAIGCFLTHCGLNSTIE ALSLGVPMVAMPIWSDQHANASFVEKVWRVGVRVRVSEKNGVVGRDEIEKCVREVMDGGMEMKKNAIKWREVVVKAVEEGGSSFRNIDDFVTKIMTHTKK VRNRMLINS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10024834 [exp]	0	1
AT1G71680			Transmembrane amino acid trans...		Lus10008263 [exp]	1.4	0.9658
AT5G18430			GDSL-like Lipase/Acylhydrolase...		Lus10004774 [exp]	2.4	0.9126
AT1G23965			unknown protein		Lus10030641 [exp]	2.8	0.9096
AT2G20760			Clathrin light chain protein (...		Lus10039815 [exp]	2.8	0.9130
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10010148 [exp]	3.2	0.8694
					Lus10021343 [exp]	4.7	0.8686
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10033234 [exp]	6.9	0.8524
AT5G44680			DNA glycosylase superfamily pr...		Lus10036248 [exp]	8.1	0.8893
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10010061 [exp]	8.5	0.8740
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	9.4	0.8748

Compare expression of checked genes

Lus10024834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.