Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20030 103 / 3e-25 Plant Tudor-like RNA-binding protein (.1) AT4G32440 72 / 8e-14 Plant Tudor-like RNA-binding protein (.1.2.3) AT2G25590 46 / 2e-05 Plant Tudor-like protein (.1) AT3G12140 45 / 3e-05 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G13020 45 / 3e-05 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 45 / 3e-05 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT5G06780 44 / 0.0001 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018749 [exp] 553 / 0 AT4G32440 130 / 3e-35 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10014715 [exp] 281 / 3e-93 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10003091 [exp] 278 / 2e-92 AT5G20030 112 / 6e-28 Plant Tudor-like RNA-binding protein (.1) Lus10017088 [exp] 50 / 1e-06 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10027325 [exp] 46 / 5e-06 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1) Lus10000040 [exp] 45 / 9e-06 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10037805 [exp] 46 / 3e-05 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10021038 [exp] 45 / 3e-05 AT5G06780 290 / 3e-97 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) Lus10004188 [exp] 45 / 4e-05 AT5G13020 321 / 2e-107 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G216200 [exp] 241 / 2e-77 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.002G046800 [exp] 214 / 1e-66 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.018G030500 [exp] 85 / 3e-18 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.006G250600 [exp] 82 / 2e-17 AT4G32440 272 / 4e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.001G173900 [exp] 69 / 1e-12 AT4G32440 208 / 2e-63 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.016G047600 [exp] 48 / 6e-06 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 47 / 8e-06 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.005G011100 [exp] 47 / 1e-05 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.001G013800 [exp] 45 / 4e-05 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.T070080 [exp] 45 / 5e-05 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [flax] [poplar] ENT ENT domain CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10024835 pacid=23179004 polypeptide=Lus10024835 locus=Lus10024835.g ID=Lus10024835.BGIv1.0 annot-version=v1.0 ATGAAGTTCAGGAAAGGGGATCTAGTGGAAATCCTCAGAAGAGAAAACAAGCAAGATGGAGGTTCATGGTTTCCAGGCCATGTGATTTCCGTACGGGAAA CTCATTTCCTGGTTATGTATGAATCCCTTTTGGTCAACGGTGATGAGGAGCTATTGACGGAGAAGGTTTCCAAGCTTGATGTTAGGCCTAGGCCGCCTCT TAAGGAGGAAGGGAAGAGGAAATGGAAGGTTGGTGATGTAGCTGAAGTGTTTGATGTTCAGTGCTGGAGGATTGGGAAAATCGTCAAGGCATTGAAGAAT AAGAAGAAGAACAAGTTTGTTGTCAAACTATCTGGGTTCATTCAGCTGAAGGAGTTCCATGTTTCTGATCTTAGGGTGCAGCAGGTCTGGCATAAGAACA AGTGGTTCTTGATAGGCAAGGATGCTCAAAGTCGACGAAAGGATGCTCAATGTCCCATACCCCGAGTTTCGTGCTTAACAGCGAAAGATAATAACTTTGT CGAGCAAGATAACAACGGTCGAACGAAAAGGTCTTCAAAGGATCTCGTAATTCGTATGCCAGGTTTCCATCAGAGGCCTATAGAACATAATAACAATGTT CATCATGATGCAGAAGAAGCAAGTGCTCGCTTGTTTGACGAAGCTAGCTACCAGCAGTGCTCTGTGGCTAGCTGTAGCTCAAACGATTTCGCTTACTCTC GCGATCACGACTTTCATCATCCATCAACCGTGTCTGAGAACTCAGAGAACTCAGATGCCGAGTCCTCCTTCCCATCTGCTAAAAAACAAAACGACGGAAA GAATGTGGAGGCTGACATTCATGCATTGGAGTTCCATGCTTACAGGTCAACGGTAAAAGCGTTGTACGCTTCGGGTCCTTTGAGTTGGGAGCAAGAGCTG CTGTTGTCGAATCTTCGACACTCTCTTCATATTTCAGACGAAGAACATCTGTTCCAGCTGCGGCATCTGTTGTCAACCCAGGTTCTCTAG
AA sequence Show only first row Show all	>Lus10024835 pacid=23179004 polypeptide=Lus10024835 locus=Lus10024835.g ID=Lus10024835.BGIv1.0 annot-version=v1.0 MKFRKGDLVEILRRENKQDGGSWFPGHVISVRETHFLVMYESLLVNGDEELLTEKVSKLDVRPRPPLKEEGKRKWKVGDVAEVFDVQCWRIGKIVKALKN KKKNKFVVKLSGFIQLKEFHVSDLRVQQVWHKNKWFLIGKDAQSRRKDAQCPIPRVSCLTAKDNNFVEQDNNGRTKRSSKDLVIRMPGFHQRPIEHNNNV HHDAEEASARLFDEASYQQCSVASCSSNDFAYSRDHDFHHPSTVSENSENSDAESSFPSAKKQNDGKNVEADIHALEFHAYRSTVKALYASGPLSWEQEL LLSNLRHSLHISDEEHLFQLRHLLSTQVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	0	1
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	1.7	0.9800
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	3.9	0.9672
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042259 [exp]	5.1	0.9561
AT2G22690			zinc ion binding (.1.2)		Lus10014078 [exp]	5.3	0.9604
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10019837 [exp]	5.7	0.9601
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	6.6	0.9742
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10025837 [exp]	6.9	0.9665
AT1G11020			RING/FYVE/PHD zinc finger supe...		Lus10033053 [exp]	7.0	0.9497
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	7.7	0.9661
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	8.1	0.9664

Compare expression of checked genes

Lus10024835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.