Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63430 241 / 3e-70 unknown protein AT3G02170 87 / 3e-17 LNG2 longifolia2 (.1) AT5G15580 79 / 1e-14 LNG1 longifolia1 (.1) AT1G74160 64 / 4e-10 unknown protein AT1G18620 56 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018750 [exp] 1404 / 0 AT3G63430 248 / 6e-73 unknown protein Lus10014716 [exp] 944 / 0 AT3G63430 227 / 2e-65 unknown protein Lus10003090 [exp] 888 / 0 AT3G63430 236 / 1e-68 unknown protein Lus10021612 [exp] 100 / 3e-24 ND / Lus10017857 [exp] 66 / 1e-10 AT1G74160 752 / 0.0 unknown protein Lus10034678 [exp] 64 / 4e-10 AT1G74160 594 / 0.0 unknown protein Lus10034677 [exp] 52 / 7e-07 AT1G74160 182 / 1e-51 unknown protein Lus10021148 [exp] 52 / 1e-06 AT1G74160 236 / 9e-69 unknown protein Lus10042850 [exp] 47 / 7e-05 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046700 [exp] 859 / 0 AT3G63430 327 / 8e-103 unknown protein Potri.005G216300 [exp] 799 / 0 AT3G63430 245 / 3e-72 unknown protein Potri.015G058900 [exp] 61 / 4e-09 AT1G74160 795 / 0.0 unknown protein Potri.017G095000 [exp] 61 / 5e-09 AT1G74160 399 / 3e-122 unknown protein Potri.012G061900 [exp] 58 / 2e-08 AT1G74160 730 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024836 pacid=23178938 polypeptide=Lus10024836 locus=Lus10024836.g ID=Lus10024836.BGIv1.0 annot-version=v1.0 ATGACGGGGGTTGTTCATGAACAGAACCTTGAGAAGCAGATTGAGAAGCAAATGGGGTGCATGGCTGGCTTCCTTCAGATCTTTGATCGTCATCAGATTC TCACCGGGAAACGCCTCTGCTCTAACAAACGCCTTCCTCCTTCTGCGGTAGCTGATTCGGCTTCGGAGGCGGAAAAGCCGGTTGGTTCTCCGGCGATAGC ACTATTGGCGGAATCGGAGAAGCAGCACCAGTTTGAAACGAGATCTATTCCTTCGCCGGATAAGTTCAAGCAATCCCCAGTGGTGGTGGTGTCGGCGCCT TGTTCACCGGCGCCGGAAGTTGTGACTACTCCAACCAAATCGCCTTTGCCACTTCCGGTCTTCCAAGGCACAAAATCGTCGATGTGGAAGTTTGGTAAAG AGACTCCGAGGCTGTCACTGGACAGTAGAGCTACAGTCGATGCGAAAGGAAGGCTTAAGCCTAGAGAGCTTCGGACTAGCGCATCGATGCCGATGACGAA TCGGGAGAAGGACGGTGGGGAAGAATCCGACGGTAATGACAAGGATCCGAATCGATCTCCTAGTGTAATCGCAAAGTTGATGGGGTTGGACCGGTTGCCG GAATCGGATCCAGAAGAGGCAGAGATCACGCAGCCCGAATTACGAAGATCCGCTTCTGAGTCGAGAGCGAACAGAGATCTGCAACAGTACCGATTCATTG ACGGCGTTAATTTCCAGCTGAAGCAGTCCTTGCAAGCCAATCATCAGCAAAATGTGCAGAGCAATCTGCAAAGTAAAATGGCGAGAGACTCGATAGCCAC GAGAGACTCGATGGCCAAGGATCGGAAAGAGTACAATGCTGTACGGAACGGTAGAATCGAAACAGGGAGGCAACAGCCAAACAGAGGAATAGGACAGAGG AAATGCTTTTACGACTCGGCAGATTTCTTTCCAGAGCCGAAACAGAACGTTTCTATCTACGGCGAGATCGAGAAGAGGCTCAGAATGCGAGGGATCGATG AGCCATCCAAAGATCTCGAGAAACTCAAACAAATCCTCGAGGCTCTGCAGCTGAAAGGCCTACTTCATTCGAACAAACCGCCGGCGAATCTATCCAGCAG CCGAAACCTCGTGTACGATCCAAGCTTCGAGGATTCTCCTATCGTCGTGATGAAGCCGGCGAGATCAACGTCTCCTATGAGCAGGCAAGCGGCAAGAATC GGAAGCGATTCTCCACCGGCGAGTTTCAGAGCGAGACCCGGCCTCCGTCGAGATTCTTGTTTCGAAACATCGCCGGTGACGAGATATAGGAGAGATAATC CGGAGATTGAAAAGAACGCCAACGTCCGGACTTGTGCCAGAGGAAGGAATTCCAGTTCGCCAACTCGAAGCGAGAGCAGTGCCAAGAGTCCTATAAGGAG ACGACCACTGAACATTGAAACGCAGAGAAGAATCGGGAATGATTCGGTAGAACAGAGACGAGTATCTCCGGTTCAGTCTCCCAGGATCGGGTCAAGAAGA TCCGGACCGGAACAACCAGCCAACCAGTCACCAAGAAACAGAAGAAAGCCGACGGAGATTCGTCGGAAGGAGGATAGTAAGGTGTTCAGTCCCACAGAGG ATGAATCGTCTACGCTCTCAGAGAGCAGTTTTAGCGCCAATTCACAACTCGACCTCGAGAGTTCCAAGGCGGAGGAATTCAACAAAGATGGAAGACATAT ACTGGAGAGGTGTGATAAGCTTCTCCACAGCATTGCAGAGATGACGGCGGCCACCACAGAGTTACAACCGAGTCCGGTATCGGTACTGGACTCATCATTT TACAAAGAGGAATCTTCTCCTTCGCCAGTTATGAAACGTAACGTCGATTTCAAAGGGCAATCAACGGAATCAGAAGATGACATTTGGAGCTTCCCGGCGC GGGAGTCATCCCAATCCGACGACAGCGAGTTCACCTACGTCTCCGACGTCCTCCTAGCCTCAACTTACTTACCAGAAGACTCCGACGTGTTCCTTCTTTT AGAGAAGCAGCAGTACCTCCGAGGGAAAGACACCTCCAAGGCGTCAAGACTGCAGAGGAGGCTCACCTTCGACACCGTCAATGAAATCGTGAACAAGAAG AAAGACCTGCCTCCTTGGAAAGCTGTTACCTCCTCCGTCGATCAAATATGGTCAGAGTTGCAGAGGATTCAGGTGAAGGACTCGTCGACGACAGAGGACC TTTTCGAGGTGATCTGCGGCGTGTTGAGGAAGGATTTGGCAGGGGATGCGGTGAACGCATGGGAAGATTGTCCGGTTGAGATGTCGGAAGCGGTGTTGGA TATTGAGAGGCTTATATTCAAGGACTTGATCGGGGAGACCATCGGAGATCTTGCTGCTTTTGGCGGTAGATATAGCCACGAAGCTGCTGGCAACTCCTCT GCGTCGTACCTCCGCCGGAAGTTGGTGTTCTAA
AA sequence Show only first row Show all	>Lus10024836 pacid=23178938 polypeptide=Lus10024836 locus=Lus10024836.g ID=Lus10024836.BGIv1.0 annot-version=v1.0 MTGVVHEQNLEKQIEKQMGCMAGFLQIFDRHQILTGKRLCSNKRLPPSAVADSASEAEKPVGSPAIALLAESEKQHQFETRSIPSPDKFKQSPVVVVSAP CSPAPEVVTTPTKSPLPLPVFQGTKSSMWKFGKETPRLSLDSRATVDAKGRLKPRELRTSASMPMTNREKDGGEESDGNDKDPNRSPSVIAKLMGLDRLP ESDPEEAEITQPELRRSASESRANRDLQQYRFIDGVNFQLKQSLQANHQQNVQSNLQSKMARDSIATRDSMAKDRKEYNAVRNGRIETGRQQPNRGIGQR KCFYDSADFFPEPKQNVSIYGEIEKRLRMRGIDEPSKDLEKLKQILEALQLKGLLHSNKPPANLSSSRNLVYDPSFEDSPIVVMKPARSTSPMSRQAARI GSDSPPASFRARPGLRRDSCFETSPVTRYRRDNPEIEKNANVRTCARGRNSSSPTRSESSAKSPIRRRPLNIETQRRIGNDSVEQRRVSPVQSPRIGSRR SGPEQPANQSPRNRRKPTEIRRKEDSKVFSPTEDESSTLSESSFSANSQLDLESSKAEEFNKDGRHILERCDKLLHSIAEMTAATTELQPSPVSVLDSSF YKEESSPSPVMKRNVDFKGQSTESEDDIWSFPARESSQSDDSEFTYVSDVLLASTYLPEDSDVFLLLEKQQYLRGKDTSKASRLQRRLTFDTVNEIVNKK KDLPPWKAVTSSVDQIWSELQRIQVKDSSTTEDLFEVICGVLRKDLAGDAVNAWEDCPVEMSEAVLDIERLIFKDLIGETIGDLAAFGGRYSHEAAGNSS ASYLRRKLVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63430			unknown protein		Lus10024836 [exp]	0	1
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10018608 [exp]	2.4	0.9598
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10018932 [exp]	2.4	0.9371
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10042739 [exp]	3.0	0.9650
AT5G52920		PKP-BETA1, PKP2...	PLASTIDIAL PYRUVATE KINASE 2, ...		Lus10039316 [exp]	4.7	0.9163
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10039844 [exp]	6.9	0.9301
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10004489 [exp]	7.7	0.9277
AT5G62170			unknown protein		Lus10031666 [exp]	8.2	0.9075
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022679 [exp]	9.5	0.9471
AT5G11560			catalytics (.1)		Lus10022144 [exp]	11.0	0.9173
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10029695 [exp]	11.5	0.9183

Compare expression of checked genes

Lus10024836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.