Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03055 212 / 4e-67 unknown protein AT1G64680 147 / 3e-42 unknown protein AT4G01995 96 / 1e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018752 [exp] 445 / 4e-158 AT1G03055 230 / 5e-75 unknown protein Lus10017338 [exp] 160 / 4e-44 AT1G02800 390 / 1e-130 cellulase 2 (.1) Lus10001667 [exp] 150 / 1e-43 AT1G64680 339 / 1e-119 unknown protein Lus10012004 [exp] 97 / 2e-22 AT4G01995 283 / 9e-96 unknown protein Lus10016264 [exp] 79 / 1e-16 AT4G01995 215 / 3e-69 unknown protein Lus10018751 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G216400 [exp] 281 / 1e-93 AT1G03055 235 / 8e-77 unknown protein Potri.002G046500 [exp] 270 / 9e-90 AT1G03055 258 / 3e-86 unknown protein Potri.001G083300 [exp] 160 / 8e-47 AT1G64680 383 / 8e-136 unknown protein Potri.002G194500 [exp] 115 / 7e-30 AT4G01995 285 / 3e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024837 pacid=23179002 polypeptide=Lus10024837 locus=Lus10024837.g ID=Lus10024837.BGIv1.0 annot-version=v1.0 ATGGAAATGATGTCTACCGTCCATACGACGTCGTATCCTCTTCTCCTCCCAGCACGTACGGGTCGGAGGTTTCCTAGCGTAGTAGTTCGAGCAGTGCTGT CCAGACCGTCGGAGAATTTCGGCAGTAAGGGGAAGAAGATGAGCAAGAGCTCAGTACACGTTGCGACCACCACTGCTGACGATTTCTTGTCAACGGGGGT ATCATCGTCGCCCCCTCAGCAGCAGCAGCCGACGAAGAAAACGGAGTATCATGACAACTGGCTCGAGGCTGCGGCGATTGACTACTTGTCACGCCACGTC CAAGAAGCAACAGGGGCGAGAAACGAGAAGAGCGGCTACGAGAGTTTGGTGCAGGCGACGACAGACGTAACGAGGAAGTTCGACGTGAGTCAGCAGCGTC AGCTTGTGCTTCAGGCTCTTGCTGCCGCCATTCCTTCACCAATCCTTAACCTGATACGGACGCTTCTTCCAAACTCTAAATTCAAAAGAGAGTACTTCGC TGCTTTCACCACTGTCTTCTTCCCCTGGCTCGTCGGACCCTGCGAGGTACGGGAATCGGAGTTCAACGGGAGGAAAGAAAAGAACGTCGTCCACATCAAA AAGTGCAGGTTCTTGGAGCAGAGTAATTGTGTTGGGATGTGTAGTAATCTATGTAAAGTGCCATCTCAGACCTTTATCCAGGCCTCCTTAGGATTGCCTG TCAACATGGTTCCTAATTTTGATGACATGAGCTGCGAGATGATATTTGGAGAGGACCCCCCACCGTTGAATGAAGATCCGGCTTTCAAGCAACCATGCTC GAAACTCTCTATACAATCGCGGCGAGATTGCACGGTTTCACTCATGACGATTCTAACATTAGCAGTTGATCACGTGCTCTCGAGGGAGGAAGAAAAACTA GCTTACCAATTGAATGCAGCTAGAGATCGAGGAAGTAGGACCGGACTGTCAGTTGCCGGATTTCGATTCTATCAGTTGCCGCCATTGGAGTTCGCAATCG GAGTGAAGCAAACAGAAGTTTGTGGCAACGCAACCGGAGCGGAAAGTTCTCCGATCGTAATGCCATTCAAATGA
AA sequence Show only first row Show all	>Lus10024837 pacid=23179002 polypeptide=Lus10024837 locus=Lus10024837.g ID=Lus10024837.BGIv1.0 annot-version=v1.0 MEMMSTVHTTSYPLLLPARTGRRFPSVVVRAVLSRPSENFGSKGKKMSKSSVHVATTTADDFLSTGVSSSPPQQQQPTKKTEYHDNWLEAAAIDYLSRHV QEATGARNEKSGYESLVQATTDVTRKFDVSQQRQLVLQALAAAIPSPILNLIRTLLPNSKFKREYFAAFTTVFFPWLVGPCEVRESEFNGRKEKNVVHIK KCRFLEQSNCVGMCSNLCKVPSQTFIQASLGLPVNMVPNFDDMSCEMIFGEDPPPLNEDPAFKQPCSKLSIQSRRDCTVSLMTILTLAVDHVLSREEEKL AYQLNAARDRGSRTGLSVAGFRFYQLPPLEFAIGVKQTEVCGNATGAESSPIVMPFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03055			unknown protein		Lus10024837 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	4.8	0.8670
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Lus10039554 [exp]	4.9	0.8372
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012511 [exp]	5.8	0.8001
					Lus10043183 [exp]	8.4	0.7178
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	8.6	0.8412
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	10.7	0.8310
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	11.7	0.8398
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	14.9	0.8307
					Lus10021406 [exp]	16.3	0.8292
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10005354 [exp]	17.4	0.8272

Compare expression of checked genes

Lus10024837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.