Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54560 206 / 8e-70 HTA11 histone H2A 11 (.1) AT2G38810 204 / 7e-69 HTA8 histone H2A 8 (.1.2.3) AT1G52740 194 / 4e-65 HTA9 histone H2A protein 9 (.1) AT4G13570 146 / 2e-46 HTA4 histone H2A 4 (.1.2) AT1G51060 126 / 3e-38 HTA10 histone H2A 10 (.1) AT4G27230 125 / 8e-38 HTA2 histone H2A 2 (.1.2) AT5G54640 125 / 1e-37 ATHTA1, HTA1, RAT5 RESISTANT TO AGROBACTERIUM TRANSFORMATION 5, histone H2A 1, Histone superfamily protein (.1) AT3G20670 125 / 1e-37 HTA13 histone H2A 13 (.1) AT1G08880 124 / 3e-37 HTA5 ,G-H2AX ,GAMMA-H2AX ,H2AXA histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) AT5G02560 124 / 5e-37 HTA12 histone H2A 12 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018753 [exp] 223 / 3e-76 AT3G54560 225 / 3e-77 histone H2A 11 (.1) Lus10003088 [exp] 217 / 4e-74 AT3G54560 233 / 1e-80 histone H2A 11 (.1) Lus10014717 [exp] 217 / 4e-74 AT3G54560 233 / 1e-80 histone H2A 11 (.1) Lus10019449 [exp] 201 / 2e-67 AT1G52740 228 / 2e-78 histone H2A protein 9 (.1) Lus10043301 [exp] 200 / 2e-67 AT1G52740 227 / 4e-78 histone H2A protein 9 (.1) Lus10019447 [exp] 200 / 2e-67 AT1G52740 227 / 4e-78 histone H2A protein 9 (.1) Lus10042960 [exp] 125 / 1e-37 AT1G51060 243 / 2e-84 histone H2A 10 (.1) Lus10032464 [exp] 125 / 1e-37 AT1G51060 240 / 2e-83 histone H2A 10 (.1) Lus10039691 [exp] 125 / 2e-37 AT1G54690 249 / 1e-86 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G216600 [exp] 216 / 2e-73 AT3G54560 209 / 5e-71 histone H2A 11 (.1) Potri.002G046400 [exp] 215 / 2e-73 AT3G54560 209 / 4e-71 histone H2A 11 (.1) Potri.018G032100 [exp] 201 / 6e-68 AT1G52740 223 / 1e-76 histone H2A protein 9 (.1) Potri.018G032000 [exp] 201 / 7e-68 AT1G52740 223 / 1e-76 histone H2A protein 9 (.1) Potri.006G249400 [exp] 201 / 9e-68 AT1G52740 224 / 4e-77 histone H2A protein 9 (.1) Potri.006G249300 [exp] 201 / 9e-68 AT1G52740 224 / 4e-77 histone H2A protein 9 (.1) Potri.011G131400 [exp] 126 / 2e-38 AT1G51060 200 / 1e-67 histone H2A 10 (.1) Potri.004G031300 [exp] 125 / 7e-38 AT1G08880 150 / 6e-48 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.001G415700 [exp] 125 / 1e-37 AT1G51060 174 / 1e-56 histone H2A 10 (.1) Potri.013G028900 [exp] 124 / 2e-37 AT1G54690 220 / 4e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence Show only first row Show all	>Lus10024838 pacid=23178900 polypeptide=Lus10024838 locus=Lus10024838.g ID=Lus10024838.BGIv1.0 annot-version=v1.0 ATGGCAGGGAAAGGAGGTAAAGGGCTTCTGGCGGCCAAGACCCCGGCGGCTAACAAGGACAAGGGAGACAAGGACAAGAAGAAGCCTACCTCCAGGTCTT CTCGCGCCGGCATCCAGTTTCCGGTGGGGCGTATCCATAGGCATCTGAAGCAGAGGATAGCTTCTCATGGCCGAGTAGGGGCAACAGCTGCAGTCTACTT GGCATCGATCCTTGAGTATCTCACCGCTGAGGTGCTGGAGCTTGCTGGGAACGCTAGCAAGGATTTGAAAGTGAAGAGGATAACTCCGAGGCATCTGCAG CTGGCCATTCGAGGAGATGAGGAGCTGGACACACTGATCAAGGGTACCATTGCTGGTGGAGGTGTGATTCCTCATATTCACAAGTCACTCATCAACAAGA CCACCAAGGAATGA
AA sequence Show only first row Show all	>Lus10024838 pacid=23178900 polypeptide=Lus10024838 locus=Lus10024838.g ID=Lus10024838.BGIv1.0 annot-version=v1.0 MAGKGGKGLLAAKTPAANKDKGDKDKKKPTSRSSRAGIQFPVGRIHRHLKQRIASHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQ LAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10024838 [exp]	0	1
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Lus10028044 [exp]	1.7	0.9574
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009652 [exp]	2.4	0.9425
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10003268 [exp]	3.7	0.9316
AT5G52800			DNA primases (.1.2.3)		Lus10014953 [exp]	4.0	0.9293
AT3G53730			Histone superfamily protein (....		Lus10005896 [exp]	4.5	0.9323
AT3G53730			Histone superfamily protein (....		Lus10005898 [exp]	4.9	0.9322
AT5G49170			unknown protein		Lus10024954 [exp]	5.7	0.9083
AT5G65360			Histone superfamily protein (....		Lus10012744 [exp]	5.7	0.9354
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031823 [exp]	6.6	0.9172
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	6.7	0.9355

Compare expression of checked genes

Lus10024838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.