Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032337 [exp] 40 / 0.0003 AT3G42170 839 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126740 [exp] 39 / 0.0005 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126780 [exp] 38 / 0.001 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF02892 [flax] [poplar] zf-BED BED zinc finger
Representative CDS sequence Show only first row Show all	>Lus10024839 pacid=23178958 polypeptide=Lus10024839 locus=Lus10024839.g ID=Lus10024839.BGIv1.0 annot-version=v1.0 ATGGAGAATACTGGCAGCATCGAATCGAACTCCCCGCCACCTGCTCCTCAACGAGCAGGTGGAGTGGTATTCGTAGACGGACCTGGAATTGCAGATGCAA AGAAGAGGACGAGGGCAGACGTGTGGGATCACTTTGAAATCGCATTCGTCGAACAGGGAAACCCTAAGAAGACGATCCGGAAGGGCAAATGCAAGCACTG CAATACTCTGATCGCTACTGATTCGAGACTGAACGGTACTTCCAGCTTGAGGAGGCATGTTGAGCGGCATTGTCATGCTATTGGTGCCAATGCTAGCAGA GATGTTCATGGTAGTTGTAACAATGCTTGTGGGAAAATGGTGGTTAAGAAGCCTAAGATCAATAGTCATCTGACGATTCTGAATTACTTCCGTCCTAACT CGGTTAGGCTTAAGCTTTGA
AA sequence Show only first row Show all	>Lus10024839 pacid=23178958 polypeptide=Lus10024839 locus=Lus10024839.g ID=Lus10024839.BGIv1.0 annot-version=v1.0 MENTGSIESNSPPPAPQRAGGVVFVDGPGIADAKKRTRADVWDHFEIAFVEQGNPKKTIRKGKCKHCNTLIATDSRLNGTSSLRRHVERHCHAIGANASR DVHGSCNNACGKMVVKKPKINSHLTILNYFRPNSVRLKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024839 [exp]	0	1
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10027305 [exp]	30.6	0.6053
AT5G25570			unknown protein		Lus10007669 [exp]	35.8	0.5964
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Lus10043032 [exp]	59.6	0.5248
AT1G13290	C2H2ZnF	WIP6, DOT5	WIP domain protein 6, DEFECTIV...		Lus10035044 [exp]	63.6	0.5859
AT1G07020			unknown protein		Lus10026396 [exp]	89.2	0.5295
AT1G60630			Leucine-rich repeat protein ki...		Lus10019429 [exp]	93.0	0.5793
					Lus10017181 [exp]	104.3	0.5555
					Lus10008817 [exp]	126.2	0.5758
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10036616 [exp]	136.7	0.5286
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10016190 [exp]	188.1	0.5333

Compare expression of checked genes

Lus10024839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.