Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22970 306 / 3e-102 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT2G38820 304 / 5e-102 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G14620 275 / 2e-90 Protein of unknown function (DUF506) (.1) AT3G54550 196 / 4e-60 Protein of unknown function (DUF506) (.1) AT3G07350 131 / 2e-35 Protein of unknown function (DUF506) (.1) AT3G25240 126 / 1e-33 Protein of unknown function (DUF506) (.1) AT2G39650 120 / 3e-31 Protein of unknown function (DUF506) (.1) AT1G77160 114 / 2e-29 Protein of unknown function (DUF506) (.1) AT1G62420 114 / 3e-29 Protein of unknown function (DUF506) (.1) AT4G32480 114 / 3e-29 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018754 [exp] 659 / 0 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003087 [exp] 493 / 1e-175 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10014718 [exp] 488 / 2e-173 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10039397 [exp] 311 / 2e-102 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10006634 [exp] 297 / 5e-98 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003174 [exp] 136 / 4e-37 AT3G07350 253 / 2e-83 Protein of unknown function (DUF506) (.1) Lus10002335 [exp] 130 / 1e-36 AT3G07350 177 / 7e-56 Protein of unknown function (DUF506) (.1) Lus10023412 [exp] 131 / 3e-35 AT2G39650 273 / 2e-91 Protein of unknown function (DUF506) (.1) Lus10000956 [exp] 125 / 5e-34 AT2G39650 266 / 1e-89 Protein of unknown function (DUF506) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046300 [exp] 420 / 2e-146 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 389 / 3e-134 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G159800 [exp] 338 / 1e-114 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.010G080600 [exp] 326 / 2e-109 AT3G22970 371 / 3e-127 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G058200 [exp] 140 / 3e-39 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.007G109700 [exp] 138 / 2e-38 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G188100 [exp] 130 / 1e-35 AT1G77160 169 / 8e-52 Protein of unknown function (DUF506) (.1) Potri.004G184700 [exp] 131 / 2e-35 AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1) Potri.004G001400 [exp] 131 / 2e-35 AT1G62420 209 / 2e-66 Protein of unknown function (DUF506) (.1) Potri.008G056100 [exp] 125 / 3e-33 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10024840 pacid=23178925 polypeptide=Lus10024840 locus=Lus10024840.g ID=Lus10024840.BGIv1.0 annot-version=v1.0 ATGCCACTGACGATGAAGATTCAGCCGGTTGATTCCTACGCTCCGGAGGAGCTCCCTCGGATGGAGCCGGTGAAGCAGCCGGTGGTCAAATCAAGACTGA AGCGGCTGTTCGAGCGGCAGTTCCTGCGGAGCTCCTCAGCTGAGAAAGTTGGAGCCATTACCGAAGAGCCCCAATCCAACGGCGGAGAGCTGGAGCCTAG CTCGTTGTGCTTGGCCAACATGGTGCAGAGCTTCATTGAGGACAACAACAGCAGCGATCGGCAACAGTCGGTTAAGTGTGGCCGCAGCTGCTTCAATGGG AACTGCGAGGATAGCTCCGAAGACGAGTTTGAATATTTTGGAGGAGGCGGCAGTTTCGGCGGCGAATCCAATCGCACTCCGTTCGGCGAAGCTTGTGATC TTCTGAAGACTTTGGTGCCTTGCTCGAGCGTTATTGAAAGGAATTTACTGGCGGACATTGCAAAGATTGTCGATAAGAACAAGATCAACAAGCGAAATGA GGAATTCTGCAGGAAGATCGTTACAGAAGGATTGAGTGCTCTCGGCTTGAACTCTTCAATCTGCAAGTCTCGATGGGAGAAATCATCCAATCATCCCGCT GGAGAATATGAATACATAGATGTGATCATGCAAGGAAACGAGAGGCTCCTAATCGACATTGATTTCCGGTCTCAATTTGAGATCGCTAGATCTACAAGGG CATACAAATCAATCCTCCAGACACTGCCGCATATATTCGTCGGGAAGTCTGATCGTCTTCAGAAGATCGTTGGGATTGTATCAGAGGCAGCCAAACAGAG CTTGAAGAAGAAAGGGATGCACATTCCGCCATGGAGGAAAACTGAGTATGTCAAAGCCAAATGGCTCTCTCCTTATACTAGAAGTTCAAAATCACATGAA CCTGATCCTCAGCTTCCAGCTAATCAACTTCTGATTCAAGACGGGAGCTGTAAGTTGGAAATTAGTATTGGGATAAAACAGATCTCGGAGGCAGCTGAGC CTACCGAATCTGTTCCAGAAGAGAAGGCGGCGACCATGGTGGTTACCAAGTGGAACACACCAGAGTCTCAGCCCAAGAGTTTTCAGATGGGGGCTAAGGT CGTTAGCGGTTTGGCTTCAGTCATTGCAGACTAG
AA sequence Show only first row Show all	>Lus10024840 pacid=23178925 polypeptide=Lus10024840 locus=Lus10024840.g ID=Lus10024840.BGIv1.0 annot-version=v1.0 MPLTMKIQPVDSYAPEELPRMEPVKQPVVKSRLKRLFERQFLRSSSAEKVGAITEEPQSNGGELEPSSLCLANMVQSFIEDNNSSDRQQSVKCGRSCFNG NCEDSSEDEFEYFGGGGSFGGESNRTPFGEACDLLKTLVPCSSVIERNLLADIAKIVDKNKINKRNEEFCRKIVTEGLSALGLNSSICKSRWEKSSNHPA GEYEYIDVIMQGNERLLIDIDFRSQFEIARSTRAYKSILQTLPHIFVGKSDRLQKIVGIVSEAAKQSLKKKGMHIPPWRKTEYVKAKWLSPYTRSSKSHE PDPQLPANQLLIQDGSCKLEISIGIKQISEAAEPTESVPEEKAATMVVTKWNTPESQPKSFQMGAKVVSGLASVIAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22970			Protein of unknown function (D...		Lus10024840 [exp]	0	1
AT2G38820			Protein of unknown function (D...		Lus10018754 [exp]	1.0	0.9644
AT3G04350			Plant protein of unknown funct...		Lus10027952 [exp]	4.6	0.9194
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	6.9	0.9276
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10003463 [exp]	9.5	0.9182
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	11.2	0.9252
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	14.5	0.9219
AT5G42710			unknown protein		Lus10010807 [exp]	15.0	0.9224
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10040678 [exp]	18.5	0.8748
AT5G39785			Protein of unknown function (D...		Lus10037176 [exp]	19.6	0.9147
AT5G67540			Arabinanase/levansucrase/inver...		Lus10019280 [exp]	20.4	0.9052

Compare expression of checked genes

Lus10024840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.