Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38840 976 / 0 Guanylate-binding family protein (.1) AT5G46070 135 / 3e-33 Guanylate-binding family protein (.1) AT1G03830 70 / 3e-12 guanylate-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018755 [exp] 1168 / 0 AT2G38840 989 / 0.0 Guanylate-binding family protein (.1) Lus10014720 [exp] 1060 / 0 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10003084 [exp] 760 / 0 AT2G38840 650 / 0.0 Guanylate-binding family protein (.1) Lus10003085 [exp] 297 / 3e-98 AT2G38840 298 / 8e-99 Guanylate-binding family protein (.1) Lus10015390 [exp] 145 / 2e-36 AT5G46070 1392 / 0.0 Guanylate-binding family protein (.1) Lus10013965 [exp] 141 / 5e-35 AT5G46070 1390 / 0.0 Guanylate-binding family protein (.1) Lus10025456 [exp] 141 / 6e-35 AT5G46070 1401 / 0.0 Guanylate-binding family protein (.1) Lus10015327 [exp] 139 / 4e-34 AT5G46070 1415 / 0.0 Guanylate-binding family protein (.1) Lus10018638 [exp] 81 / 1e-15 AT5G46070 526 / 2e-169 Guanylate-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046000 [exp] 1040 / 0 AT2G38840 1011 / 0.0 Guanylate-binding family protein (.1) Potri.005G217300 [exp] 1002 / 0 AT2G38840 960 / 0.0 Guanylate-binding family protein (.1) Potri.017G016800 [exp] 143 / 1e-35 AT5G46070 928 / 0.0 Guanylate-binding family protein (.1) Potri.004G049400 [exp] 136 / 2e-33 AT5G46070 1334 / 0.0 Guanylate-binding family protein (.1) Potri.011G058500 [exp] 131 / 1e-31 AT5G46070 1355 / 0.0 Guanylate-binding family protein (.1) Potri.012G117034 [exp] 39 / 0.001 AT5G45160 142 / 1e-40 Root hair defective 3 GTP-binding protein (RHD3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02841 [flax] [poplar] GBP_C Guanylate-binding protein, C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF02263 [flax] [poplar] GBP Guanylate-binding protein, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024841 pacid=23178833 polypeptide=Lus10024841 locus=Lus10024841.g ID=Lus10024841.BGIv1.0 annot-version=v1.0 ATGTTATGCCGTTGTTTTCTTTGCATATGCAGGTTTCCTATTGTTGAGCCAGACCCAGGGCATACAAAACTTCGTCTTTCAAGTGAAGGCTTGGAAGCTA TAAGACGAATAAAAAACCCAATTGCTGCTGTTGCTGTGATTGGTCCATATCGCTCTGGAAAATCATTTTTGCTTAATCAACTTCTTTCCCTTTCTTGTGA TGAAGGTTTTGGTGTTGGACATATGCGTGATACCAAGACAAAAGGAATTTGGGTATGGGGAAGCCCCATAGAATTAGACATCAATGGAGTAAAAACATCT GTGTTTTACCTAGATACTGAAGGATTTGAAAGCATTGGGAAGTCAAATGTCTATGATGATAGGATATTTGCTCTTGCAACTGTTTTGAGTTCCGTGCTTG TTTATAATCTTCCCGAAACGATACGCGAGGCTGACATATCTCGCCTGTCTTTTGCTGTTGAACTTGCTGAAGAATTCTATGGAAGAGTGAAGGGCGAAGA CGTTGCATTCGAACCTGCAAAACTTCTATGGCTTATCCAACGAGATTTTCTACAGGGGAAATCAGTGCAGGAGATGGTGAATGAAGCCCTTCGACGTGTC CCCAATCAAGACGGAGACAGAAATATAGATCAGGTTAATCAGATCCGAGAATCATTGGCTATAATGGGTGACAACAGCACAGCTTTTAGCTTGCCTCAAC CGCATCTCCAGCGAACAAAGCTTTGTGAATTGAAGGACGGTGAGCTCGAGCAATCGTATGTCTCGAGAAGGGAGAAATTGAAGGAGATTGTTTCCAGTAT CATTCGTCCAAAGATTGTGCAGGGTAAATCCTTGAATGGGGAGGAGTTTGTAGCATTCCTTGAGCAGATTCTGGAAGCCTTAAACAAAGGAGAAATACCA TCAACCGGATCTCTTGTAGAGGTTTTCAACAAGGCTATCCTTGAGAGATGTTTGAAAATATACAGTGAAGCCATGGCTAAATTGAATTTGCCTCTGACAG AGGAAACCGTGCAAGATGCCCATGGAAGGTCAAGGGAACAAGCAATGAAAGTTTTTGATGAACAGCATTTCGGCCGTCATCATGCCAAGGCATCCGTTAT GCAACTTGATGAAGAAATAGACAAGGTTTACAAGCACATCATGATCACAAACGAATACCAATCTGCAAAACTCTGTGAGGCACTATACTCGAGTTGCGAG GACAAAATGGACCAGCTACAAGTTCTGAAACTTCCTTCAATGGCGAAATTCAACGCCGGGTTCTTACAGTGCAACCGGAGTTTCGAGCTGGAGTGCGTCG GACCTTCAAAAGCAACGTACGAGAATCGTATGGTGAAGATGATGGGGAAATCGAAATCCCAATTCATAAAGGATTACAACCACAGGCTATTCAACTGGCT GGTAACCTTCTCCCTCGTGATGGTAGTAGTAGGCCGGTTCATCATCAAGTTCATTCTGCTCGAAATGGGCGCTTGGATATTGTTCATCTTCCTCGAGACG TACACTCGGATGTTCTGGTCAGCCGAGTCGCTGTACTACAACCCGGTTTGGCATTTCATCGTCGCTACCTGGGAGACCGTCGTGTACAGCCCCGTCCTCG ATTTAGACAGGTGGGCGATACCGATGGTTTTCATCGTTGCAATGCTGCTGCTATATTGGCGGTGTTACGGCAGGAAGAAACACGGGTCGAGATGGATACT GCCTATGTACAATAACACGACGAAGAACGGTCCAAACAGACCAAGATCGGAGTAA
AA sequence Show only first row Show all	>Lus10024841 pacid=23178833 polypeptide=Lus10024841 locus=Lus10024841.g ID=Lus10024841.BGIv1.0 annot-version=v1.0 MLCRCFLCICRFPIVEPDPGHTKLRLSSEGLEAIRRIKNPIAAVAVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGSPIELDINGVKTS VFYLDTEGFESIGKSNVYDDRIFALATVLSSVLVYNLPETIREADISRLSFAVELAEEFYGRVKGEDVAFEPAKLLWLIQRDFLQGKSVQEMVNEALRRV PNQDGDRNIDQVNQIRESLAIMGDNSTAFSLPQPHLQRTKLCELKDGELEQSYVSRREKLKEIVSSIIRPKIVQGKSLNGEEFVAFLEQILEALNKGEIP STGSLVEVFNKAILERCLKIYSEAMAKLNLPLTEETVQDAHGRSREQAMKVFDEQHFGRHHAKASVMQLDEEIDKVYKHIMITNEYQSAKLCEALYSSCE DKMDQLQVLKLPSMAKFNAGFLQCNRSFELECVGPSKATYENRMVKMMGKSKSQFIKDYNHRLFNWLVTFSLVMVVVGRFIIKFILLEMGAWILFIFLET YTRMFWSAESLYYNPVWHFIVATWETVVYSPVLDLDRWAIPMVFIVAMLLLYWRCYGRKKHGSRWILPMYNNTTKNGPNRPRSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38840			Guanylate-binding family prote...		Lus10024841 [exp]	0	1
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10042006 [exp]	3.0	0.8162
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10006780 [exp]	3.5	0.7771
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10009501 [exp]	4.6	0.7940
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10041234 [exp]	6.0	0.7869
AT3G62060			Pectinacetylesterase family pr...		Lus10007200 [exp]	6.0	0.7950
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	6.6	0.8378
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	7.1	0.8295
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021976 [exp]	10.0	0.7641
AT3G49720			unknown protein		Lus10011564 [exp]	12.2	0.7862
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	13.0	0.7995

Compare expression of checked genes

Lus10024841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.