Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64280 309 / 4e-100 SAI1, NIM1, NPR1, ATNPR1 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) AT4G26120 308 / 2e-99 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT4G19660 275 / 3e-87 ATNPR4, NPR4 NPR1-like protein 4 (.1) AT5G45110 255 / 1e-79 ATNPR3, NPR3 NPR1-like protein 3 (.1) AT2G41370 83 / 4e-17 BOP2 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT3G57130 78 / 2e-15 BOP1 BLADE ON PETIOLE 1, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1.2) AT5G40160 47 / 9e-06 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT5G66055 46 / 3e-05 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018756 [exp] 711 / 0 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10018289 [exp] 278 / 5e-88 AT5G45110 650 / 0.0 NPR1-like protein 3 (.1) Lus10040620 [exp] 272 / 1e-85 AT5G45110 647 / 0.0 NPR1-like protein 3 (.1) Lus10038337 [exp] 241 / 2e-74 AT5G45110 575 / 0.0 NPR1-like protein 3 (.1) Lus10036200 [exp] 214 / 7e-64 AT5G45110 489 / 6e-168 NPR1-like protein 3 (.1) Lus10035413 [exp] 82 / 1e-16 AT2G41370 699 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10031017 [exp] 82 / 1e-16 AT2G41370 701 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10014522 [exp] 45 / 8e-05 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10032165 [exp] 43 / 0.0003 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148100 [exp] 481 / 2e-167 AT1G64280 596 / 0.0 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Potri.015G117200 [exp] 309 / 4e-100 AT5G45110 656 / 0.0 NPR1-like protein 3 (.1) Potri.012G118300 [exp] 300 / 3e-98 AT5G45110 566 / 0.0 NPR1-like protein 3 (.1) Potri.012G118500 [exp] 303 / 5e-98 AT5G45110 644 / 0.0 NPR1-like protein 3 (.1) Potri.002G056500 [exp] 264 / 8e-83 AT5G45110 518 / 1e-178 NPR1-like protein 3 (.1) Potri.005G206100 [exp] 253 / 2e-78 AT5G45110 531 / 0.0 NPR1-like protein 3 (.1) Potri.015G116900 [exp] 122 / 4e-33 AT5G45110 169 / 3e-50 NPR1-like protein 3 (.1) Potri.006G043400 [exp] 82 / 1e-16 AT2G41370 671 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.016G040500 [exp] 79 / 6e-16 AT2G41370 639 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.015G113466 [exp] 62 / 5e-12 AT5G45110 99 / 1e-25 NPR1-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0465 [flax] [poplar] PF12313 [flax] [poplar] NPR1_like_C NPR1/NIM1 like defence protein C terminal CL0465 [flax] [poplar] Ank PF11900 [flax] [poplar] DUF3420 Domain of unknown function (DUF3420)
Representative CDS sequence Show only first row Show all	>Lus10024842 pacid=23178951 polypeptide=Lus10024842 locus=Lus10024842.g ID=Lus10024842.BGIv1.0 annot-version=v1.0 ATGGACATGATCGTCAAATCCGACGTCGACATCGTAACTCTGGACAAGGCTCTGCCACACCATATCGTCAAGCAAATAACAGACGCACGTTGGATGCTAA ACTCATACAAAACCCCTGATGAAAAGGAGGAAATCCACCCTGACAACAAACATGTGAAGAGAATCCACCGAGCTCTGGACTCCGACGACGTCGAGCTGGT GAGGATGCTGCTCAAGGAAGGACACACCAATCTCGACGATGCGGAGGCGCTTCACTATGCTGTCGCTTACTGCGATTCGAAGACCACCATGGAGGTCCTC GATCTCGGCCTAGCTGATGTGAATCGGACGAACTCGAGAGGGTACACGGTGCTCCACGTGGCAGCGATGAGGAAAGAGCCGAAGATAATCGTGTCGTTGC TGACGAAAGGAGCCAGACCTTGTGCTCTCACGTCAGACGGCCGAAAGGCTCTGCAGATTGCTAAAAGACTCACTAGAGCTGCAGACTACCACAAGTACTG TACAACCGAGGAAGGTGGTAATAATAATAATAACAAAGCTTCTTCCAAGGAAAGATTGTGCATAGAGATACTGGAGCAGGCTGAGCGGAGGTCTCCACTG CTCGGAGAAGCTTCGGTTTCTCTCGCGCTGGCTGGTGATGACGTGAGAAGCAAGCTACTCTACCTTGAAAACAGAGTTGGACTAGCAAAGCTTCTGTTCC CAATGGAAGCCAAGGTTGTGATGGATATTATGCAACAAGACGGCACATCCGATGAGCTCCCATTAGGCAACATGATCCAATCTAACAACTCTGCCGATGC GGCGCAGAGGTGTACCGTGGACTTGAACGAGGCGCCTTTCCGAATCAAAGAAGAGCTTCTCAACAGAATGAGAGCACTCTCCAGAGCAGTGGAAGTGGGG AAGCGATTCTTCCCTCGATGCTCGGACGTGTTGAATAAGATCATGGACGACGACAATGAGTTGACTCAGCTAGCGTGTTTGGGAAACGGTACTCCGGAGG AACGGCAGAGGAAGAGGAAGAGGTACTTGGAGCTGCAGCAGTTGCTGGGAAAGGCTTTCAGTGCCGATAAAGAAGAGTTCGATTGGACGTCCGCGATTTC TTGCTCGTCGGCCTCCAAATCGAAATCTGTGGATGGGATCCTGCCTCCGCCAGCCAAGAGAAGTGCTACTGGTAAGTACTAA
AA sequence Show only first row Show all	>Lus10024842 pacid=23178951 polypeptide=Lus10024842 locus=Lus10024842.g ID=Lus10024842.BGIv1.0 annot-version=v1.0 MDMIVKSDVDIVTLDKALPHHIVKQITDARWMLNSYKTPDEKEEIHPDNKHVKRIHRALDSDDVELVRMLLKEGHTNLDDAEALHYAVAYCDSKTTMEVL DLGLADVNRTNSRGYTVLHVAAMRKEPKIIVSLLTKGARPCALTSDGRKALQIAKRLTRAADYHKYCTTEEGGNNNNNKASSKERLCIEILEQAERRSPL LGEASVSLALAGDDVRSKLLYLENRVGLAKLLFPMEAKVVMDIMQQDGTSDELPLGNMIQSNNSADAAQRCTVDLNEAPFRIKEELLNRMRALSRAVEVG KRFFPRCSDVLNKIMDDDNELTQLACLGNGTPEERQRKRKRYLELQQLLGKAFSADKEEFDWTSAISCSSASKSKSVDGILPPPAKRSATGKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26120			Ankyrin repeat family protein ...		Lus10024842 [exp]	0	1
AT4G19820			Glycosyl hydrolase family prot...		Lus10036315 [exp]	4.0	0.7112
					Lus10013529 [exp]	4.0	0.7938
					Lus10000984 [exp]	8.4	0.7329
					Lus10012326 [exp]	8.8	0.6498
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	10.2	0.7329
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10005439 [exp]	11.8	0.7329
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	13.2	0.7329
					Lus10032805 [exp]	14.5	0.7329
AT3G05060			NOP56-like pre RNA processing ...		Lus10007265 [exp]	14.7	0.7005
					Lus10017835 [exp]	15.7	0.7329

Compare expression of checked genes

Lus10024842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.