Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26120 94 / 2e-23 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT1G64280 94 / 3e-23 SAI1, NIM1, NPR1, ATNPR1 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) AT5G45110 67 / 1e-13 ATNPR3, NPR3 NPR1-like protein 3 (.1) AT4G19660 54 / 3e-09 ATNPR4, NPR4 NPR1-like protein 4 (.1) AT3G57130 41 / 5e-05 BOP1 BLADE ON PETIOLE 1, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018756 [exp] 211 / 9e-65 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10018289 [exp] 62 / 6e-12 AT5G45110 650 / 0.0 NPR1-like protein 3 (.1) Lus10040620 [exp] 62 / 6e-12 AT5G45110 647 / 0.0 NPR1-like protein 3 (.1) Lus10038337 [exp] 61 / 2e-11 AT5G45110 575 / 0.0 NPR1-like protein 3 (.1) Lus10036200 [exp] 55 / 2e-09 AT5G45110 489 / 6e-168 NPR1-like protein 3 (.1) Lus10037522 [exp] 39 / 0.0007 AT4G15840 944 / 0.0 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148100 [exp] 120 / 1e-32 AT1G64280 596 / 0.0 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Potri.012G118500 [exp] 58 / 1e-10 AT5G45110 644 / 0.0 NPR1-like protein 3 (.1) Potri.015G117200 [exp] 57 / 2e-10 AT5G45110 656 / 0.0 NPR1-like protein 3 (.1) Potri.002G056500 [exp] 50 / 6e-08 AT5G45110 518 / 1e-178 NPR1-like protein 3 (.1) Potri.005G206100 [exp] 50 / 6e-08 AT5G45110 531 / 0.0 NPR1-like protein 3 (.1) Potri.006G043400 [exp] 44 / 9e-06 AT2G41370 671 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.016G040500 [exp] 44 / 1e-05 AT2G41370 639 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10024843 pacid=23178979 polypeptide=Lus10024843 locus=Lus10024843.g ID=Lus10024843.BGIv1.0 annot-version=v1.0 ATGGATTACAGAATCGGAATCTGCGATTCGAACGACATCATCAGCAATGGGAGCAGCTCCTGCTGCGTAGAACCTCCATCAACTTCACACCCGGAATTCG CATCCCTCCACTGCCTTTCCCAAAACCTAGACTCGATCTTCGAAACTTCATCGCCGGAATTCGACTTCTTCGCCGATGCCAGAATCGCAGTTCGAGGGCG CGAGGTGGCGGTGCACAGATGCATTCTGTCGTCGAGGAGTCCGTACTTCAGGAACGTACTGTCGTCCAAGAAGAAATGTGGTGAGGTTTTTGAATTGAAA GAGCTGGCTAAGGACTACGACGTTGGATTCGAATCGCTGGTGGCAGTTATCGGTTACTTGTACAGCGGGAGAGTGAGGGCGTTGCCGCAGGCGGGAATTT GTGTGTGTGGATGA
AA sequence Show only first row Show all	>Lus10024843 pacid=23178979 polypeptide=Lus10024843 locus=Lus10024843.g ID=Lus10024843.BGIv1.0 annot-version=v1.0 MDYRIGICDSNDIISNGSSSCCVEPPSTSHPEFASLHCLSQNLDSIFETSSPEFDFFADARIAVRGREVAVHRCILSSRSPYFRNVLSSKKKCGEVFELK ELAKDYDVGFESLVAVIGYLYSGRVRALPQAGICVCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26120			Ankyrin repeat family protein ...		Lus10024843 [exp]	0	1
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031269 [exp]	2.2	0.8318
					Lus10020900 [exp]	9.6	0.7829
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022312 [exp]	9.6	0.7797
AT5G49810		MMT	methionine S-methyltransferase...		Lus10038132 [exp]	10.1	0.7618
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	11.0	0.7996
AT4G35980			unknown protein		Lus10042598 [exp]	13.0	0.7582
AT3G16970			Plant self-incompatibility pro...		Lus10030565 [exp]	16.5	0.7178
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10022318 [exp]	18.8	0.7774
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003117 [exp]	22.1	0.7594
AT2G02340		ATPP2-B8	phloem protein 2-B8 (.1)		Lus10018175 [exp]	28.4	0.7018

Compare expression of checked genes

Lus10024843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.