Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10340 307 / 3e-96 Ankyrin repeat family protein (.1.2) AT2G24600 264 / 1e-79 Ankyrin repeat family protein (.1.2.3.4) AT1G34050 187 / 2e-51 Ankyrin repeat family protein (.1) AT5G54710 146 / 6e-37 Ankyrin repeat family protein (.1) AT5G50140 129 / 1e-31 Ankyrin repeat family protein (.1) AT3G12360 115 / 1e-26 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT5G02620 112 / 5e-26 ATANK1, ANK1 ankyrin-like1 (.1) AT5G54700 107 / 2e-24 Ankyrin repeat family protein (.1) AT1G07710 103 / 5e-23 Ankyrin repeat family protein (.1) AT1G05640 101 / 3e-22 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018757 [exp] 699 / 0 AT1G34050 298 / 3e-93 Ankyrin repeat family protein (.1) Lus10024845 [exp] 309 / 2e-101 AT2G24600 193 / 5e-58 Ankyrin repeat family protein (.1.2.3.4) Lus10037894 [exp] 228 / 1e-65 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10038609 [exp] 209 / 2e-62 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10038608 [exp] 132 / 7e-34 AT1G10340 168 / 2e-47 Ankyrin repeat family protein (.1.2) Lus10003308 [exp] 127 / 2e-30 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10023460 [exp] 112 / 6e-26 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10041537 [exp] 109 / 4e-25 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10008329 [exp] 106 / 1e-23 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G187600 [exp] 515 / 7e-176 AT5G50140 280 / 3e-86 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 310 / 2e-97 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.010G212700 [exp] 121 / 9e-29 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.011G133300 [exp] 119 / 4e-28 AT1G03670 250 / 6e-75 ankyrin repeat family protein (.1) Potri.011G133700 [exp] 117 / 4e-28 AT1G03670 185 / 8e-53 ankyrin repeat family protein (.1) Potri.008G048400 [exp] 118 / 1e-27 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.015G111300 [exp] 116 / 2e-27 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 116 / 3e-27 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.006G223800 [exp] 114 / 7e-27 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 115 / 8e-27 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10024844 pacid=23178976 polypeptide=Lus10024844 locus=Lus10024844.g ID=Lus10024844.BGIv1.0 annot-version=v1.0 ATGCGTTCAAAACTGTTTGAGGCCATTGTAAGGAATGACAGGGGAATGCTCAGAAGCTTGATTCAGGAGAATGAAACCATTCTGGATCAAACGACAGCTT CCGGATTGGAAACAGCCCTCCACCTGGCTGCAAAATATGGTCAGGAAGATCTGGTGGAGGATATCCTGAAGGTCCGGCTGGAGATGGTTCAGGCTGAGAA CAAGAATCTGGAAACTCCTCTCCATGAGGCATGTAGGCAAGGGAATCCCGCCATTGTTCTGTTGCTGCTTGAGGCTCATCCTTGGGGAGCTTGCAAGCTG AACTACCAGAATCAAACGGCTCTTTTCATCGCCTCCAGGTACGGCCACTTGGATGTAGTCCAGATCCTGTTGAGGCAGCCATGGCTGCTGGGGATTGAAG ATGATGTTCCTGTGTCTTCTCTTTATGTTGCAGTTTCAAAAGGATATACTGATATTGCGAGGGAGATACTACATGCATCGCCGAATTTGGCACACCACAC CGATACCAATGGATGCAACCTTTTGCATCATTCTTGTTGCAAAGGACACTTGGACATAACAAGAATGCTTCTGAAGCACGACGTTGATATGGCACTCCAC CTCAACAACTCTGGCCACACTCCGCTGCACCTGGCAGTCATCAATGGTCATGTGCAGACCCTCAAAGCATTCTTGGAAATAGCTCCTTCGTCATTCCACC GCCTTACAACTGAAAAAGAGACGGTGTTCCATATGGCAGTGAGATTCAATAGGTTCACAGCCTTTAAGTTTCTGGCAAATCTTTTCAGTGACACAAACCT GTTTCACTGCCCAGACGAGTTTGGAAACACAGTTTTACATGTTGCAGTCTCCAGTGGACATTACTTGCTAGCAGGGTACATCATCAATGAGACAAGAGTG AAGATCAACTCCAAGAACGCCAGAGGACTCACAGCACTTGACATGATAAAACATGCTGAAAATACTATAGAGATGAGTAGCCTTAGAGAAATGTTGGTAA AAGCAGGTGGTAAAACATACAGCGAAGAATCTTCAGCAACCTCACCGGAGAGTCCTAGTCCTAGAGATGCACTCAACCGTGAATATGATAGCCTGCGGCT CGCTCCATCACCAGCAGACAATAATTCAGTAGAATACCTTCAAATGTCTTCGGTAGATGGAACCACTGGCTCACAAATTGATGAAGACTCCCCAAAACAG AAGAAACCAAAGGCAGCAGCAAGAAGACCATCCTTGAAATCAGTGAAGCACAAGAGTCGGCTACGAAAGGAAGAGCTGATCAAGATGTACAAAATGAAAC ACAAGAAGAACCAGAAGGTGTATATAGAGGCTCTACAAAATGCCAGGAACACTATCATACTTGTAGCCATACTGATTGCAACGGTGACTTTCGCAGCTGG TATCAACCCTCCCGGTGGGGTGCATCAAGATGCAGGTCCATTGGGAGGGCAATCGACAGTGGGGAGAACAACAGCATTCAGAGTATTTATGATATGCAAC AACATTGCATTGTTCACATCTCTGGCCATAGTGATAGTTCTGCTTAGCATAATTCCATTCCGGAGGAAGCCATTGATGAGGCTCCTTACAGTTGCTCACA AAGTGCTGTGGGTGGCAGTGGCATTCATGGCTGTTGCCTACGTAGCAGGAACTTGCGTGATCATGCCACACGGTGGCGATGGAAAATGGGACTTTGGAGC CGCTGTGTCAATTGGGGCTGGTGGGTTGGCGACTGTCTTCCTTTGGCTTGGAGTGATTTCGGTGAAGCATTGGCTGCGGAAAACTAAGTGGAGGGAAGAA AGGAAGGGGAGAGAACGAGAAGGAGAAAGAGATGGTAAGCTTAATAAGGAGATTGTACAACCGACATCATGGCGGCGAAGTTATTCACAATCTTCCAACT CTGATGTGCATAGCGCTGTACTTTCCGGTTTCCACCCCTATTGA
AA sequence Show only first row Show all	>Lus10024844 pacid=23178976 polypeptide=Lus10024844 locus=Lus10024844.g ID=Lus10024844.BGIv1.0 annot-version=v1.0 MRSKLFEAIVRNDRGMLRSLIQENETILDQTTASGLETALHLAAKYGQEDLVEDILKVRLEMVQAENKNLETPLHEACRQGNPAIVLLLLEAHPWGACKL NYQNQTALFIASRYGHLDVVQILLRQPWLLGIEDDVPVSSLYVAVSKGYTDIAREILHASPNLAHHTDTNGCNLLHHSCCKGHLDITRMLLKHDVDMALH LNNSGHTPLHLAVINGHVQTLKAFLEIAPSSFHRLTTEKETVFHMAVRFNRFTAFKFLANLFSDTNLFHCPDEFGNTVLHVAVSSGHYLLAGYIINETRV KINSKNARGLTALDMIKHAENTIEMSSLREMLVKAGGKTYSEESSATSPESPSPRDALNREYDSLRLAPSPADNNSVEYLQMSSVDGTTGSQIDEDSPKQ KKPKAAARRPSLKSVKHKSRLRKEELIKMYKMKHKKNQKVYIEALQNARNTIILVAILIATVTFAAGINPPGGVHQDAGPLGGQSTVGRTTAFRVFMICN NIALFTSLAIVIVLLSIIPFRRKPLMRLLTVAHKVLWVAVAFMAVAYVAGTCVIMPHGGDGKWDFGAAVSIGAGGLATVFLWLGVISVKHWLRKTKWREE RKGREREGERDGKLNKEIVQPTSWRRSYSQSSNSDVHSAVLSGFHPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34050			Ankyrin repeat family protein ...		Lus10024844 [exp]	0	1
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	1.7	0.9298
					Lus10019165 [exp]	2.4	0.9109
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	3.5	0.9249
AT2G34290			Protein kinase superfamily pro...		Lus10035236 [exp]	4.7	0.8859
AT5G10530			Concanavalin A-like lectin pro...		Lus10007073 [exp]	4.9	0.8913
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10036130 [exp]	6.6	0.9045
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10042750 [exp]	9.2	0.8896
					Lus10042751 [exp]	9.5	0.8764
AT1G76360			Protein kinase superfamily pro...		Lus10030742 [exp]	10.6	0.8783
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	10.8	0.8872

Compare expression of checked genes

Lus10024844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.