Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10340 147 / 1e-40 Ankyrin repeat family protein (.1.2) AT2G24600 143 / 3e-39 Ankyrin repeat family protein (.1.2.3.4) AT5G50140 125 / 5e-33 Ankyrin repeat family protein (.1) AT1G34050 124 / 3e-32 Ankyrin repeat family protein (.1) AT5G54710 121 / 2e-31 Ankyrin repeat family protein (.1) AT5G54700 100 / 6e-24 Ankyrin repeat family protein (.1) AT4G03500 58 / 1e-09 Ankyrin repeat family protein (.1) AT2G31820 58 / 2e-09 Ankyrin repeat family protein (.1) AT4G03460 53 / 1e-07 Ankyrin repeat family protein (.1) AT1G03670 52 / 1e-07 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024844 [exp] 345 / 9e-116 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10018757 [exp] 318 / 1e-105 AT1G34050 298 / 3e-93 Ankyrin repeat family protein (.1) Lus10038608 [exp] 126 / 2e-34 AT1G10340 168 / 2e-47 Ankyrin repeat family protein (.1.2) Lus10037894 [exp] 125 / 9e-33 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10025287 [exp] 51 / 2e-07 AT1G07710 403 / 2e-138 Ankyrin repeat family protein (.1) Lus10024440 [exp] 51 / 3e-07 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 50 / 6e-07 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 50 / 9e-07 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 49 / 1e-06 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G187600 [exp] 180 / 1e-52 AT5G50140 280 / 3e-86 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 142 / 5e-39 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.001G443600 [exp] 58 / 2e-10 AT1G34050 62 / 9e-12 Ankyrin repeat family protein (.1) Potri.001G444300 [exp] 58 / 2e-10 AT1G34050 66 / 1e-12 Ankyrin repeat family protein (.1) Potri.014G050532 [exp] 58 / 3e-10 AT2G24600 69 / 1e-13 Ankyrin repeat family protein (.1.2.3.4) Potri.017G006800 [exp] 55 / 1e-08 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.019G106000 [exp] 55 / 2e-08 AT4G03460 109 / 8e-25 Ankyrin repeat family protein (.1) Potri.019G108000 [exp] 54 / 4e-08 AT4G03500 126 / 3e-30 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 53 / 6e-08 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.014G050700 [exp] 51 / 9e-08 AT5G51160 56 / 2e-09 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024845 pacid=23178882 polypeptide=Lus10024845 locus=Lus10024845.g ID=Lus10024845.BGIv1.0 annot-version=v1.0 ATGTCGTCGGTGGATGGAACCACTGGCTCACAAATTGATGAAGACTCCTCAAAACAGAAGAAACCAAAGGCAACAGCAAGAAGACCATCTTTGAAATCAG TGAAGCACAAGAGTCGGCTACGAAAGGAAGAGCTGGTCAAGATGTACAAAATGAAACACAAGAAGAACCACAAGGTGTATATAGAGGCTCTACAAAATGC CAGGAACACTATCATACTTGTAGCCATACTGATTGCAACGGTGACTTTCGCAGCTGGTATCAACCCTCCCGGTGGGGTGCATCAAGATGCAGGTCCATTG GGAGGGCAATCGACAGTGGGGAGAACAACAGCATTCAGAGTATTTATGATATGCAAAAACATTGCATTGTTCACATCTCTGGCCATAGTGATAGTTCTGC TTAGCATAATTCCATTCCGGAGGAAGCCATTGATGAGGTTCCTTACAGTTGCTCACAAAGTGCTGTGGGTGGCAGTGGCACTCATGGCTGTTGCCTACGT AGCAGGAACTTGCGTGATCATGCAACACGGTGGCAATGGAAAATGGGACTTTGGAGCCGCTGTGTCAATTGGGGCTGGTGGGTTGGCGACTGTCTTCCTT TGCCTTGGAGTGATTTCGGTGAAGCATTGGCTGCGGAAAACTAAGTGGAGGGAAGAAAGGAAGGGGAGAGAACAAGGAAGTGATGGTAACGTTGAGTCAC TAGCTTCCAACTCTCATGTGCATAGCGCCATGCTTTCGGGTTACCACACCTATTAA
AA sequence Show only first row Show all	>Lus10024845 pacid=23178882 polypeptide=Lus10024845 locus=Lus10024845.g ID=Lus10024845.BGIv1.0 annot-version=v1.0 MSSVDGTTGSQIDEDSSKQKKPKATARRPSLKSVKHKSRLRKEELVKMYKMKHKKNHKVYIEALQNARNTIILVAILIATVTFAAGINPPGGVHQDAGPL GGQSTVGRTTAFRVFMICKNIALFTSLAIVIVLLSIIPFRRKPLMRFLTVAHKVLWVAVALMAVAYVAGTCVIMQHGGNGKWDFGAAVSIGAGGLATVFL CLGVISVKHWLRKTKWREERKGREQGSDGNVESLASNSHVHSAMLSGYHTY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24600			Ankyrin repeat family protein ...		Lus10024845 [exp]	0	1
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	4.9	0.9293
					Lus10003893 [exp]	7.6	0.9259
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	8.3	0.9232
AT5G45190			Cyclin family protein (.1.2)		Lus10018272 [exp]	9.9	0.8968
					Lus10010828 [exp]	10.6	0.8926
AT2G24960			unknown protein		Lus10042421 [exp]	12.2	0.9205
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	13.0	0.9202
					Lus10009699 [exp]	13.2	0.9113
AT3G58880			F-box/RNI-like superfamily pro...		Lus10020329 [exp]	15.5	0.9062
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10033212 [exp]	15.7	0.9164

Compare expression of checked genes

Lus10024845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.