Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54620 160 / 2e-44 bZIP BZO2H4, ATBZIP25 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) AT4G02640 140 / 4e-37 bZIP BZO2H1, AT4G02640, ATBZIP10 Arabidopsis thaliana basic leucine zipper 10, bZIP transcription factor family protein (.1.2) AT5G28770 129 / 8e-34 bZIP BZO2H3, ATBZIP63 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) AT5G24800 66 / 6e-12 bZIP BZO2H2, ATBZIP9 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024848 [exp] 664 / 0 AT4G02610 421 / 3e-144 Aldolase-type TIM barrel family protein (.1) Lus10018759 [exp] 624 / 0 AT3G54620 182 / 1e-52 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Lus10015913 [exp] 151 / 7e-41 AT5G28770 244 / 7e-78 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Lus10006590 [exp] 149 / 4e-40 AT5G28770 260 / 2e-84 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Lus10026973 [exp] 58 / 5e-09 AT5G24800 191 / 6e-59 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) Lus10020170 [exp] 55 / 3e-08 AT5G24800 148 / 3e-43 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G045800 [exp] 237 / 2e-72 AT3G54620 123 / 1e-30 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Potri.005G217500 [exp] 235 / 3e-72 AT3G54620 160 / 2e-44 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Potri.013G040700 [exp] 160 / 2e-44 AT5G28770 234 / 9e-74 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.005G053200 [exp] 147 / 2e-39 AT5G28770 223 / 1e-69 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.006G277800 [exp] 57 / 6e-09 AT5G24800 222 / 2e-71 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12498 [flax] [poplar] bZIP_C Basic leucine-zipper C terminal CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10024847 pacid=23178963 polypeptide=Lus10024847 locus=Lus10024847.g ID=Lus10024847.BGIv1.0 annot-version=v1.0 ATGCACAACGTCTTCTCCGCCGACGACTTCACCGACCCTTTCTGGCAGGCGGCCGCCCCTTCGGATGCGGCGATCAACAGAAACGCATCGGAGTGGGACC TGGAGAGGTTCCTCCGTGAATTCCCTTCGTCCGGTTCCAACTCCGCAAGCGACAGCACGGTCACTGTGCCTTCGCAATCTCCGCCATCGACGAAGCCGGA GATTTGCGACGGGGATGTGATTGAGATCAGGCAGCCGCAGCTCCGGAGTCATTATGCTCAAAATCATGCTCCTTCCATGCCTCATTCTCAGCCTCATCAC GTCCCTCAGCAGCTGGATCGTGCTCCGATGGGTGCTACGATCGATACGGAAGAGTACAGGGCTTTTCTCAAGTCTCAGCTCGATCTGGCGTGCGCTGCCG TGGCTAGGAATCAGACAGCGGTTGTGAAGCCTCCTGATTTTTCTCCTTTGCTTGAGAATCAAAGTCCAGCTCCAGCTGCTAATAGTTTCCACTTGGGATC ACAACAACCATGTGCAGGTGCAAGTGCAGGTATTGGTCTTGGTAACACAATTGCACAAAGACAGGACCATGGATCACCTACAATTCAGCCGTTACCGGTG CCACAAAAGAAGCAAGAGGTGCAAACGAGGCAAACAACTGGTGGCTCATCAGGAGAAGATTCAGATGATGATGATCTTGAAGGAGATACTGGTACCAATG GAGCTCCTGCGGATGTAAAGCGGTCAAGGAGGTGCAAGACGATGCTATCAAATCGAGAATCAGCTAGACGCTCAAGAAGAAGAAAACAAGATCAACTCAA TGAACTTGAATCACAGGCTGGTCAGCTTAGAGATGAACGCACAACTCTCTTGTCGCGGCTCACTGATGTGAATCACAAGTGTGATGAAGCTTCTGTTGAC AACCGAGTCTTGAAGGCTAATATTGAGACTTTGCGGGCAAAGGTGAAGATGGCTGAAGAACAGGTCAAACGGGTGACCGGTTTGAACCCATTGCTTCTAG CAAGATCCAACGTCCCCAGTATGGGCATGCATCATCAATATACGGGAGGCACCCCAAACCACCAGTCCTTCCACCACCCGCCTCCGAACATGGCTCCTTC CGTTCCACCTCCACATATGCAACAACCAATGCACTACCCACGCAACAATGTCACTCCGGTCACCGCTAATTCCCACGGTGTCAGTGGAATGAACCACAAC ATGGGTGGCATGAACTCTATGCCGTTCCGGGCCAACGAGCATAACAGAGTTGCAGACGTCGTGGCTCCCCCGATGCAGAAGCCGGTGGGTCCTGGTGTGA ATCCACGGCCTGTGGACACGTCTGGACTTGGGATCCATGGAGTGGCCAAAGTCGACAAAAAGAAATGA
AA sequence Show only first row Show all	>Lus10024847 pacid=23178963 polypeptide=Lus10024847 locus=Lus10024847.g ID=Lus10024847.BGIv1.0 annot-version=v1.0 MHNVFSADDFTDPFWQAAAPSDAAINRNASEWDLERFLREFPSSGSNSASDSTVTVPSQSPPSTKPEICDGDVIEIRQPQLRSHYAQNHAPSMPHSQPHH VPQQLDRAPMGATIDTEEYRAFLKSQLDLACAAVARNQTAVVKPPDFSPLLENQSPAPAANSFHLGSQQPCAGASAGIGLGNTIAQRQDHGSPTIQPLPV PQKKQEVQTRQTTGGSSGEDSDDDDLEGDTGTNGAPADVKRSRRCKTMLSNRESARRSRRRKQDQLNELESQAGQLRDERTTLLSRLTDVNHKCDEASVD NRVLKANIETLRAKVKMAEEQVKRVTGLNPLLLARSNVPSMGMHHQYTGGTPNHQSFHHPPPNMAPSVPPPHMQQPMHYPRNNVTPVTANSHGVSGMNHN MGGMNSMPFRANEHNRVADVVAPPMQKPVGPGVNPRPVDTSGLGIHGVAKVDKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10024847 [exp]	0	1
AT4G26180			Mitochondrial substrate carrie...		Lus10008572 [exp]	21.1	0.7815
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Lus10031307 [exp]	34.2	0.8327
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10015289 [exp]	41.4	0.7929
AT4G19110			Protein kinase superfamily pro...		Lus10038123 [exp]	119.8	0.7995
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10034106 [exp]	149.2	0.7878
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Lus10006629 [exp]	159.5	0.7978
AT3G56360			unknown protein		Lus10034235 [exp]	206.0	0.7798

Compare expression of checked genes

Lus10024847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.