Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54640 409 / 6e-139 TRP3, TSA1 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) AT4G02610 401 / 2e-136 Aldolase-type TIM barrel family protein (.1) AT3G54620 159 / 1e-42 bZIP BZO2H4, ATBZIP25 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) AT4G02640 138 / 3e-35 bZIP BZO2H1, AT4G02640, ATBZIP10 Arabidopsis thaliana basic leucine zipper 10, bZIP transcription factor family protein (.1.2) AT5G28770 128 / 1e-32 bZIP BZO2H3, ATBZIP63 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) AT5G24800 66 / 9e-12 bZIP BZO2H2, ATBZIP9 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024847 [exp] 669 / 0 AT3G54620 171 / 2e-48 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Lus10018759 [exp] 583 / 0 AT3G54620 182 / 1e-52 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Lus10024849 [exp] 478 / 6e-166 AT4G02610 447 / 7e-160 Aldolase-type TIM barrel family protein (.1) Lus10018760 [exp] 462 / 2e-159 AT4G02610 434 / 1e-154 Aldolase-type TIM barrel family protein (.1) Lus10002719 [exp] 432 / 1e-147 AT3G54640 438 / 6e-156 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) Lus10014725 [exp] 239 / 6e-75 AT4G02610 238 / 1e-79 Aldolase-type TIM barrel family protein (.1) Lus10015913 [exp] 149 / 5e-39 AT5G28770 244 / 7e-78 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Lus10006590 [exp] 147 / 2e-38 AT5G28770 260 / 2e-84 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Lus10026973 [exp] 57 / 1e-08 AT5G24800 191 / 6e-59 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G217700 [exp] 407 / 3e-138 AT3G54640 435 / 9e-155 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) Potri.002G045700 [exp] 404 / 6e-137 AT3G54640 432 / 9e-154 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) Potri.005G217500 [exp] 235 / 5e-70 AT3G54620 160 / 2e-44 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Potri.002G045800 [exp] 236 / 1e-69 AT3G54620 123 / 1e-30 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Potri.013G040700 [exp] 158 / 5e-42 AT5G28770 234 / 9e-74 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.005G053200 [exp] 147 / 4e-38 AT5G28770 223 / 1e-69 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.006G277800 [exp] 59 / 4e-09 AT5G24800 222 / 2e-71 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00290 [flax] [poplar] Trp_syntA Tryptophan synthase alpha chain CL0036 [flax] [poplar] PF12498 [flax] [poplar] bZIP_C Basic leucine-zipper C terminal CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10024848 pacid=23178949 polypeptide=Lus10024848 locus=Lus10024848.g ID=Lus10024848.BGIv1.0 annot-version=v1.0 ATGCACAACGTCTTCTCCGCCGACGACTTCACCGACCCTTTCTGGCAGGCGGCCGCCCCTTCGGATGCGGCGATCAACAGAAACGCATCGGAGTGGGACC TGGAGAGGTTCCTCCGTGAATTCCCTTCGTCCGGTTCCAACTCCGCAAGCGACAGCACGGTCACTGTGCCTTCGCAATCTCCGCCATCGACGAAGCCGGA GATTTGCGACGGGGATGTGATTGAGATCAGGCAGCCGCAGCTCCGGAGTCATTATGCTCAAAATCATGCTCCTTCCATGCCTCATTCTCAGCCTCATCAC GTCCCTCAGCAGCTGGATCGTGCTCCGATGGGTGCTACGATCGATACGGAAGAGTACAGGGCTTTTCTCAAGTCTCAGCTCGATCTGGCGTGCGCTGCCG TGGCTAGGAATCAGACAGCGGTTGTGAAGCCTCCTGATTTTTCTCCTTTGCTTGAGAATCAAAGTCCAGCTCCAGCTGCTAATAGTTTCCACTTGGGATC ACAACAACCATGTGCAGGTGCAAGTGCAGGTATTGGTCTTGGTAACACAATTGCACAAAGACAGGACCATGGATCACCTACAATTCAGCCGTTACCGGTG CCACAAAAGAAGCAAGAGGTGCAAACGAGGCAAACAACTGGTGGCTCATCAGGAGAAGATTCAGATGATGATGATCTTGAAGGAGATACTGGTACCAATG GAGCTCCTGCGGATGTAAAGCGGTCAAGGAGGTGCAAGACGATGCTATCAAATCGAGAATCAGCTAGACGCTCAAGGAGAAGAAAACAAGATCAACTCAA TGAACTTGAATCACAGGCTGGTCAGCTTAGAGATGAACGCACAACTCTCTTGTCGCGGCTCACTGATGTGAATCACAAGTGTGATGAAGCTTCTGTTGAC AACCGAGTCTTGAAGGCTAATATTGAGACTTTGCGGGCAAAGGTGAAGATGGCTGAAGAACAGGTCAAACGGGTGACCGGTTTGAACCCATTGCTTCTAG CAAGATCCAACGTCCCCAGTATGGGCATGCATCATCAATATACGGGAGGCACCCCAAACCACCAGTCCTTCCACCACCCGCCTCCGAACATGGCTCCTTC CGTTCCACCTCCACATATGCAACAACCAATGCACTACCCACGCAACAATGTCACTCCGGTCACCGCTAATTCCCACGGTGTCAGTGGAATGAACCACAAC ATGGGTGGCATGAACTCTATGCCGTTCCGGGCCAACGAGCATAACAGAGTTGCAGACGTCGTGGCTCCCCCGATGCAGAAGCCGGTGGCCTTCATCCCAT ACATCACTGCTGGTGACCCTGACCTTTCGACCACGGCGGAAGCTTTGAAGGTTCTGGACTCTTGTGGTTCTGATATAATTGAGCTTGGTGTTCCCTACTC GGATCCTTTGGCAGATGGTCCAGTTATTCAGGCTGCAGCTACACGCTCCTTGGCGAAAGGAACCAATTTCGATTCCATCATATCAATGTTGAAGAAGGTT GTTCCAGAAATTTCTGCCCCAATTGCTTTGTTCACATATTACAACCCTATCCTGAAGCGTGGGATTGGAAAGTTCATGTCGACTGTGAAGGAAACCGGGA TACACGGACTCGTGGTTCCGGATGTTCCTCTGGAAGAGACTGAACTTCTGAGAACAGAAGCTGTTAAGCATGGGATTGAATTGGTACTTCTTACAACACC AACTACTCCAACAGAGCGAATGAAATCCATTGTCGAAGCTTCCGAAGGATTTATTTACCTCGTGAGCTCGATCGGTGTCACTGGCGCCCGAGCATCCGTC AGCAAGAAAGTACAAACCCTTCTGCAAGAGATCAAAGAGGCAACGACAAAGCCGGTAGCTGTAGGCTTTGGCATCTCGAAGCCTGAACATGTCAAGCAGG TGATGGAATGGGGTGCGGACGGGGTGATAGTAGGGAGTGCAATGGTGAGGTTGCTGGGAGAAGCCAAGTCTCCTGAAGAAGGATTGCAGGAGTTGGAGAA GTTCACTAAATCATTAAAAGCTGCACTTCTATGA
AA sequence Show only first row Show all	>Lus10024848 pacid=23178949 polypeptide=Lus10024848 locus=Lus10024848.g ID=Lus10024848.BGIv1.0 annot-version=v1.0 MHNVFSADDFTDPFWQAAAPSDAAINRNASEWDLERFLREFPSSGSNSASDSTVTVPSQSPPSTKPEICDGDVIEIRQPQLRSHYAQNHAPSMPHSQPHH VPQQLDRAPMGATIDTEEYRAFLKSQLDLACAAVARNQTAVVKPPDFSPLLENQSPAPAANSFHLGSQQPCAGASAGIGLGNTIAQRQDHGSPTIQPLPV PQKKQEVQTRQTTGGSSGEDSDDDDLEGDTGTNGAPADVKRSRRCKTMLSNRESARRSRRRKQDQLNELESQAGQLRDERTTLLSRLTDVNHKCDEASVD NRVLKANIETLRAKVKMAEEQVKRVTGLNPLLLARSNVPSMGMHHQYTGGTPNHQSFHHPPPNMAPSVPPPHMQQPMHYPRNNVTPVTANSHGVSGMNHN MGGMNSMPFRANEHNRVADVVAPPMQKPVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFDSIISMLKKV VPEISAPIALFTYYNPILKRGIGKFMSTVKETGIHGLVVPDVPLEETELLRTEAVKHGIELVLLTTPTTPTERMKSIVEASEGFIYLVSSIGVTGARASV SKKVQTLLQEIKEATTKPVAVGFGISKPEHVKQVMEWGADGVIVGSAMVRLLGEAKSPEEGLQELEKFTKSLKAALL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024848 [exp]	0	1
AT5G20950			Glycosyl hydrolase family prot...		Lus10013390 [exp]	13.6	0.5926
AT1G77010			Pentatricopeptide repeat (PPR)...		Lus10010146 [exp]	13.6	0.6213
AT3G07690			6-phosphogluconate dehydrogena...		Lus10019761 [exp]	25.7	0.5072
					Lus10004051 [exp]	27.5	0.5935
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10012751 [exp]	28.3	0.5229
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10018264 [exp]	29.5	0.5419
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10038302 [exp]	67.0	0.4733
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10007202 [exp]	73.1	0.4955
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029681 [exp]	80.5	0.4678
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10020227 [exp]	81.7	0.4946

Compare expression of checked genes

Lus10024848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.