Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54640 438 / 6e-156 TRP3, TSA1 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) AT4G02610 427 / 6e-152 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018760 [exp] 586 / 0 AT4G02610 434 / 1e-154 Aldolase-type TIM barrel family protein (.1) Lus10002719 [exp] 503 / 0 AT3G54640 438 / 6e-156 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) Lus10024848 [exp] 478 / 5e-166 AT4G02610 421 / 3e-144 Aldolase-type TIM barrel family protein (.1) Lus10014725 [exp] 239 / 5e-79 AT4G02610 238 / 1e-79 Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G217700 [exp] 457 / 3e-163 AT3G54640 435 / 9e-155 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) Potri.002G045700 [exp] 456 / 6e-163 AT3G54640 432 / 9e-154 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00290 [flax] [poplar] Trp_syntA Tryptophan synthase alpha chain
Representative CDS sequence Show only first row Show all	>Lus10024849 pacid=23178841 polypeptide=Lus10024849 locus=Lus10024849.g ID=Lus10024849.BGIv1.0 annot-version=v1.0 ATGGCCACTTCTCTGAGATCACCAATTACCTTCACTCAGCTGAAGAACCCAGAACCCCATTGCCCCCCTTTTCAGAGACCAGCTTTCGTTTCAGTAAGGA GACTTCGTCAGACGCCGCCAATAATGGCTGCTCTCACCGCAGCTCCCACCGTTGGTCTAGCCGAAACTTTCGCCAATCTCAAAAGGCAAGGCAAAGTGGC CTTCATCCCATACATCACTGCTGGTGACCCTGACCTTTCGACCACGGCGGAAGCTTTGAAGGTTCTGGACTCTTGTGGTTCTGATATAATTGAGCTTGGT GTTCCCTACTCGGATCCTTTGGCAGATGGTCCAGTTATTCAGGCTGCAGCTACACGCTCCTTGGCGAAAGGAACCAATTTCGATTCCATCATATCAATGT TGAAGAAGGTTGTTCCAGAAATTTCTGCCCCAATTGCTTTGTTCACATATTACAACCCTATCCTGAAGCGTGGGATTGGAAAGTTCATGTCGACTGTGAA GGAAACCGGGATACACGGACTTGTGGTTCCGGATGTTCCTCTGGAAGAGACTGAACTTCTGAGAACAGAAGCTGTTAAGCATGGGATTGAATTGGTACTT CTTACAACACCAACTACTCCAACAGAGCGAATGAAATCCATTGTCGAAGCTTCCGAAGGATTTATTTACCTCGTGAGCTCGATCGGTGTCACTGGCGCCC GAGCATCCGTCAGCAAGAAAGTACAAACCCTTCTGCAAGAGATCAAAGAGGCAACGACAAAGCCGGTAGCTGTAGGCTTTGGCATCTCGAAGCCTGAACA TGTCAAGCAGGTGATGGAATGGGGTGCGGACGGGGTGATAGTAGGGAGTGCAATGGTGAGGTTGCTGGGAGAAGCCAAGTCTCCTGAAGAAGGATTGCAG GAGTTGGAGAAGTTCACTAAATCATTAAAAGCTGCACTTCTATGA
AA sequence Show only first row Show all	>Lus10024849 pacid=23178841 polypeptide=Lus10024849 locus=Lus10024849.g ID=Lus10024849.BGIv1.0 annot-version=v1.0 MATSLRSPITFTQLKNPEPHCPPFQRPAFVSVRRLRQTPPIMAALTAAPTVGLAETFANLKRQGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELG VPYSDPLADGPVIQAAATRSLAKGTNFDSIISMLKKVVPEISAPIALFTYYNPILKRGIGKFMSTVKETGIHGLVVPDVPLEETELLRTEAVKHGIELVL LTTPTTPTERMKSIVEASEGFIYLVSSIGVTGARASVSKKVQTLLQEIKEATTKPVAVGFGISKPEHVKQVMEWGADGVIVGSAMVRLLGEAKSPEEGLQ ELEKFTKSLKAALL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024849 [exp]	0	1
AT4G02610			Aldolase-type TIM barrel famil...		Lus10018760 [exp]	1.7	0.7744
AT1G12330			unknown protein		Lus10024559 [exp]	5.5	0.7977
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038636 [exp]	8.8	0.7635
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10042595 [exp]	11.2	0.7721
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10028905 [exp]	11.5	0.7913
AT5G09270			unknown protein		Lus10004877 [exp]	14.1	0.7695
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Lus10013697 [exp]	15.9	0.7590
AT4G37280			MRG family protein (.1)		Lus10011511 [exp]	16.0	0.7736
AT3G27090			DCD (Development and Cell Deat...		Lus10041557 [exp]	16.6	0.7356
AT1G34770			unknown protein		Lus10033452 [exp]	16.9	0.7578

Compare expression of checked genes

Lus10024849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.