Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02590 327 / 2e-112 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G03040 301 / 1e-102 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G24260 192 / 5e-59 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT5G58010 188 / 3e-58 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G30980 187 / 1e-57 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G50915 94 / 4e-22 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G23690 93 / 2e-21 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10120 92 / 3e-21 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 93 / 4e-21 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G07340 92 / 6e-21 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018761 [exp] 476 / 3e-171 AT4G02590 318 / 2e-108 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002720 [exp] 426 / 2e-151 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10014726 [exp] 315 / 2e-109 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10006587 [exp] 251 / 2e-81 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10015909 [exp] 247 / 1e-80 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021846 [exp] 190 / 6e-58 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10036286 [exp] 153 / 2e-44 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10006491 [exp] 95 / 4e-22 AT1G10120 213 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012484 [exp] 93 / 2e-21 AT1G10120 202 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G045400 [exp] 379 / 3e-133 AT4G02590 295 / 8e-100 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G217800 [exp] 376 / 5e-132 AT4G02590 307 / 2e-104 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G053500 [exp] 267 / 2e-88 AT4G02590 228 / 1e-73 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.013G041000 [exp] 254 / 2e-83 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.018G109500 [exp] 193 / 2e-58 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G186600 [exp] 191 / 8e-58 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.006G135600 [exp] 176 / 1e-51 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.002G235400 [exp] 96 / 4e-22 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G146500 [exp] 95 / 7e-22 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G114700 [exp] 94 / 1e-21 AT1G10120 274 / 3e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024850 pacid=23178943 polypeptide=Lus10024850 locus=Lus10024850.g ID=Lus10024850.BGIv1.0 annot-version=v1.0 ATGGCCGGTAATCCCCCCGACACGCCGGCCGACGATTTCCTCCACGAAATCCTCCGCCTCCACAGCTTCGCCTCCGCCGATGATGCTCTCGCGGTCGCCT CAGAAGCTCAAGCTCCGATGTTTCTTCAGCTCAGCTCCGGAGACGCCTCCTCCGCCGGGATGACCGGTGATACCCCCGGGTTCCATGGATTCCCCCTGGG GCTCGGCTTGGACCAAGGCAAGGGAGGGTTTCTCAAGCCCGATGATGCCTCGGGAAGCGGGAAGCGGTTCCGAGAGGACTTCGTGTTTGACGGTAGAGTT CCCGGCGTCCAAAATGTTTTCCATGGGCAACCAATGCCGACTTCTGTACCAGCAGCACCGCATGCTCCAACAATGCGTCCAAGGGTAAGAGCGAGAAGAG GACAAGCCACAGATCCACACAGTATCGCCGAACGTTTGCGCCGAGAAAAAATAGCAGAGAGAATCAGGGCATTGCAGGAGTTGGTGCCCAGTGTCAACAA GACCGATAGAGCTACAATGCTGGACGAAATTGTGGATTATGTCAAGTTTCTTAGACTTCAAGTAAAGGTTCTCAGTATGAGTAGACTAGGAGGAGCCGGC GCAGTCGTGCCACTTGTAACAGAGATCCCACTATCATCAGTGGAGGATGAAAGTGGGAGAAGTCAACCAGCATGGGAGAAGTGGACAAGCGACGGGACAG AAAGGCAAGTAGCCAAACTGATGGAAGAAAACGTGGGCGCTGCGATGCAGCTTCTTCAGTCAAAGGCTCTGTGCATAATGCCAATCTCCCTGGCTTCGGC CATCTACCATACGCAACCACCGCTGCTGGATCCCCAAGCCGTCGTCAAACCAGAATCGAATCCACCCTCATAA
AA sequence Show only first row Show all	>Lus10024850 pacid=23178943 polypeptide=Lus10024850 locus=Lus10024850.g ID=Lus10024850.BGIv1.0 annot-version=v1.0 MAGNPPDTPADDFLHEILRLHSFASADDALAVASEAQAPMFLQLSSGDASSAGMTGDTPGFHGFPLGLGLDQGKGGFLKPDDASGSGKRFREDFVFDGRV PGVQNVFHGQPMPTSVPAAPHAPTMRPRVRARRGQATDPHSIAERLRREKIAERIRALQELVPSVNKTDRATMLDEIVDYVKFLRLQVKVLSMSRLGGAG AVVPLVTEIPLSSVEDESGRSQPAWEKWTSDGTERQVAKLMEENVGAAMQLLQSKALCIMPISLASAIYHTQPPLLDPQAVVKPESNPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10024850 [exp]	0	1
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020506 [exp]	7.1	0.8552
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10030962 [exp]	11.6	0.8325
AT5G06940			Leucine-rich repeat receptor-l...		Lus10040500 [exp]	12.8	0.8529
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10012454 [exp]	13.2	0.8535
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10032998 [exp]	14.6	0.8524
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	23.9	0.7905
AT1G63850			BTB/POZ domain-containing prot...		Lus10024658 [exp]	24.8	0.8377
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10014349 [exp]	26.5	0.8263
AT3G19460			Reticulon family protein (.1.2...		Lus10002815 [exp]	30.6	0.8352
AT1G09645			unknown protein		Lus10037343 [exp]	41.6	0.7953

Compare expression of checked genes

Lus10024850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.