Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02580 418 / 2e-149 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018762 [exp] 509 / 0 AT4G02580 439 / 5e-158 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1) Lus10014727 [exp] 478 / 8e-173 AT4G02580 438 / 1e-157 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1) Lus10002721 [exp] 473 / 9e-171 AT4G02580 432 / 3e-155 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G218000 [exp] 448 / 3e-161 AT4G02580 460 / 2e-166 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1) Potri.002G045200 [exp] 445 / 6e-160 AT4G02580 458 / 8e-166 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF01257 [flax] [poplar] 2Fe-2S_thioredx Thioredoxin-like [2Fe-2S] ferredoxin
Representative CDS sequence Show only first row Show all	>Lus10024851 pacid=23178857 polypeptide=Lus10024851 locus=Lus10024851.g ID=Lus10024851.BGIv1.0 annot-version=v1.0 ATGATAGGTCGTCTGGCAGCCACGCGCCTCCAGGAGATCCGTCAAGCTTTCCGGGGAGCTTCTCAGGCTTCTCGTTCGTTCTCAACTGCTCTGAACTACC ACATCGATTCGCCCGATAACAATCCGGACGTTCAATGGGAGTTCAGCTCCGTAAACCAAGAGAAGGCTTCTCGTTCGTTCTCAACTGCTCTGAACTACCA CATCGATTCGCCCGATAACAATCCGGACGTTCAATGGGACCTCCCCTCCACAAACCAAGAGAAGGTAAAGGAAATAATCTCTCATTACCCATCCAACTAC AAGCAATCTGCTGTTATTCCCCTTCTAGATCTGGCGCAGCAGCAGCATGGTGGATGGCTTCCTGTATCAGCAATGAATGCGGTGGCTAAGGTTATTGGTG TTGCTCCTATCCGTGTCTATGAAGTTGCAACGTTTTATTCCATGTTCAACAGGACACCTGTAGGCAAGTACCACCTTTTAGTTTGTGGAACAACACCATG CATGATCCGTGGGTCTCGAGAAATAGAAGATTCACTACTGAAGCATTTGGGAGTAAAACGCAATGAAGTGACAAAGGACGGTCTTTTCTCTGTCGGCGAA ATGGAATGTATGGGATCCTGCGTGAACGCGCCAATGATTACCGTTGCAGATTACTCTAATGGATCAGAAGGATACACGTACAATTATTACGAAGATGTTA CTCCAAAACGAGTTGTGGAGATAGTCGAGCTGCTTAGAAAGGGAGAAAAGTTGCCACCCGGAACACAGAACCCCAAACGTATCATGTCCGGACCAGAGGG AGGCAATACCACCCTGCTCACTGACCCGAAACCTCCTCCATGCCGGGATCTCGATGCCTGCTAA
AA sequence Show only first row Show all	>Lus10024851 pacid=23178857 polypeptide=Lus10024851 locus=Lus10024851.g ID=Lus10024851.BGIv1.0 annot-version=v1.0 MIGRLAATRLQEIRQAFRGASQASRSFSTALNYHIDSPDNNPDVQWEFSSVNQEKASRSFSTALNYHIDSPDNNPDVQWDLPSTNQEKVKEIISHYPSNY KQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVIGVAPIRVYEVATFYSMFNRTPVGKYHLLVCGTTPCMIRGSREIEDSLLKHLGVKRNEVTKDGLFSVGE MECMGSCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVELLRKGEKLPPGTQNPKRIMSGPEGGNTTLLTDPKPPPCRDLDAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10024851 [exp]	0	1
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10018762 [exp]	1.0	0.9026
AT1G12310			Calcium-binding EF-hand family...		Lus10004332 [exp]	4.0	0.8754
					Lus10042355 [exp]	4.9	0.8710
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10041288 [exp]	6.3	0.8411
AT4G33640			unknown protein		Lus10020463 [exp]	7.0	0.8281
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10039485 [exp]	8.1	0.8365
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10008448 [exp]	8.9	0.8546
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10028511 [exp]	12.0	0.8125
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	14.1	0.8193
					Lus10026314 [exp]	14.1	0.8198

Compare expression of checked genes

Lus10024851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.