Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47720 107 / 1e-27 OSB1 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) AT4G20010 93 / 3e-21 PTAC9, OSB2 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) AT5G44785 78 / 5e-16 OSB3 organellar single-stranded DNA binding protein 3 (.1.2) AT1G31010 69 / 6e-13 OSB4 organellar single-stranded DNA binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018763 [exp] 494 / 1e-178 AT1G47720 109 / 3e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10014728 [exp] 380 / 1e-133 AT1G47720 106 / 3e-27 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10002722 [exp] 198 / 9e-63 AT5G44785 57 / 2e-09 organellar single-stranded DNA binding protein 3 (.1.2) Lus10021767 [exp] 78 / 4e-16 AT1G47720 124 / 1e-31 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10032760 [exp] 0 / 1 AT1G47720 74 / 2e-15 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G218100 [exp] 321 / 2e-110 AT1G47720 114 / 6e-30 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.002G045100 [exp] 319 / 2e-109 AT1G47720 112 / 2e-29 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.014G035600 [exp] 112 / 1e-28 AT1G47720 158 / 6e-46 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.001G394200 [exp] 89 / 6e-20 AT4G20010 269 / 7e-88 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) Potri.002G129166 [exp] 50 / 7e-07 AT1G47720 84 / 2e-19 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00436 [flax] [poplar] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Lus10024852 pacid=23178968 polypeptide=Lus10024852 locus=Lus10024852.g ID=Lus10024852.BGIv1.0 annot-version=v1.0 ATGGCGTTGCAACAACTGTCTTCGCTGGCGTTCTTAAGCAAGGTTCATTTATGCTTTCGGAGTAAACTTTTGGCTAGCGGCAATTCGCCTGGTTCGTCGT GGCTAGGATTGAAACGATCGAGCTTGAACGGTAGGCTGAAGTGTTCGGCTGAGTACAGAGACTACGAACAGAACAACCAGACGGTGGTCGGCCACGATAG ACCAGCCGAAATTCCATGGAAGAAGGAGCTCTGCAACACGGTGCAGCTCATCGGCATAGTGGACGGTCCCGTCGAAATGAAGGACCTCCCGTCCGGGAAG GTCGTCGCCTGGACGAGGCTAGGGTTCAAGAAGTCTGCCGCCGAGACCTGCTGGATCAATCTGACGTTCTGGGATGAGTTGGCGCGAACTGCATCTCAAC ATTTGCAGCAAGGGAACCAGATTTATGTGTCTGGTCGATTGATTTCAGATGCAGTTGAGAATGAGGAAGGAAAAGTCGTGACTTACTATAAGTTAGTGGT GCAGCAGTTCAATTTCATCGAAAGAAACGGGTCATCTTTCTCATCATATGGTGAAGGATCATCTAACATGAACGGTTCTGGAAACAGAAAGTTCAACAAC AGCAGCAATACCTCAAATATGGGTTCCATAGAAGAGCAATGGCAAGCATTTTTCGCTAGCCCTTCGGAGTGGTGGGATAATAGGAAGAACAAGAGGAACT CCAAGTATCCAGATTTCAAGCACAAGGATACCGGGGAAGCGTTGTGGGTTGAAGGCAGGTATAACCCTCCCTGGGTGAAGTCTCAACTGGCGGTATTGGA CGAGAGATTGGGGACGATGGTCCGTGACGAGGATAACAGCAGAAGGGATATAAGTTCATTGGGGACCAACGAATTCTTGTCTTTCTAG
AA sequence Show only first row Show all	>Lus10024852 pacid=23178968 polypeptide=Lus10024852 locus=Lus10024852.g ID=Lus10024852.BGIv1.0 annot-version=v1.0 MALQQLSSLAFLSKVHLCFRSKLLASGNSPGSSWLGLKRSSLNGRLKCSAEYRDYEQNNQTVVGHDRPAEIPWKKELCNTVQLIGIVDGPVEMKDLPSGK VVAWTRLGFKKSAAETCWINLTFWDELARTASQHLQQGNQIYVSGRLISDAVENEEGKVVTYYKLVVQQFNFIERNGSSFSSYGEGSSNMNGSGNRKFNN SSNTSNMGSIEEQWQAFFASPSEWWDNRKNKRNSKYPDFKHKDTGEALWVEGRYNPPWVKSQLAVLDERLGTMVRDEDNSRRDISSLGTNEFLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10024852 [exp]	0	1
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Lus10026881 [exp]	1.7	0.9146
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10019497 [exp]	4.0	0.8408
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10028993 [exp]	5.3	0.8530
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Lus10033195 [exp]	9.3	0.8821
AT1G16790			ribosomal protein-related (.1)		Lus10033346 [exp]	13.3	0.8662
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10043345 [exp]	17.5	0.7934
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037910 [exp]	24.0	0.7506
AT5G14910			Heavy metal transport/detoxifi...		Lus10032167 [exp]	31.0	0.8526
AT3G24030			hydroxyethylthiazole kinase fa...		Lus10023688 [exp]	37.0	0.7360
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	38.2	0.8512

Compare expression of checked genes

Lus10024852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.