Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14550 183 / 2e-57 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT3G04730 181 / 2e-56 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT3G23050 180 / 7e-56 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT1G04250 172 / 4e-53 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT4G29080 152 / 3e-44 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT2G22670 142 / 2e-40 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT5G65670 142 / 3e-40 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT5G43700 133 / 2e-38 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT1G04240 133 / 2e-38 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT3G23030 122 / 3e-34 AUX_IAA IAA2 indole-3-acetic acid inducible 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018766 [exp] 189 / 1e-61 AT4G14550 145 / 2e-45 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10014731 [exp] 186 / 5e-58 AT3G04730 241 / 4e-80 indoleacetic acid-induced protein 16 (.1) Lus10015907 [exp] 183 / 1e-56 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10018765 [exp] 176 / 3e-55 AT3G04730 82 / 2e-19 indoleacetic acid-induced protein 16 (.1) Lus10039414 [exp] 178 / 8e-55 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10002724 [exp] 161 / 6e-48 AT3G23050 212 / 5e-68 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) Lus10034962 [exp] 154 / 7e-45 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10019241 [exp] 150 / 2e-43 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10011583 [exp] 149 / 3e-43 AT5G65670 333 / 2e-114 indole-3-acetic acid inducible 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G044900 [exp] 199 / 3e-63 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 196 / 4e-62 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.013G041400 [exp] 189 / 3e-59 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.005G053900 [exp] 188 / 6e-59 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.008G161200 [exp] 177 / 9e-55 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.010G078300 [exp] 169 / 3e-51 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.001G186100 [exp] 162 / 8e-48 AT4G29080 286 / 1e-95 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.003G051300 [exp] 161 / 2e-47 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.002G108000 [exp] 154 / 2e-44 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.001G177400 [exp] 149 / 3e-44 AT3G04730 211 / 8e-69 indoleacetic acid-induced protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10024854 pacid=23178830 polypeptide=Lus10024854 locus=Lus10024854.g ID=Lus10024854.BGIv1.0 annot-version=v1.0 ATGGAAGTGGAGATCATGAGGTTCGACGAGACAGAGCTCCGCCTCGGCCTTCCCGGCGGCGGAGGAGGAGGAGAATTATTAGCTGCTCATGAGGTTGTGG GAAGCACTCCTACTACTCCCACTACTGCTCATCTCATGATCAGGAAGAGAGGCTTCTCCGAGACTGTTGATTTGCAGCTCAACCTCTCTTCTTCCCCCGC CAAGGATGCTGCTGCTCCGGCGAAATCGGAGGATTGTACTAGTGCTGGTACTCCTGAGAAGATGGAGAAGAACATCAGCCTCCTTCAGGGTCAGGAATCT GCTGCTGCTGCTGATCTGGCCACCTCCAAGCCTCCTCCTGCTAAGGCGCAAGTGGTGGGATGGCCACCAGTGAGGTCGTTCAGGAAGAACATGGTGTCGT CGGCGGCGGTCCAGAAGAGCACCAACAACAAAACTACCAGTAACAAAGATGGTGTGTCGGCGGCGGAGAGCGAGCATAAGGCGGCGGCTCCGGCGGCACC GTCAGCTGCTGTGGCGGCTAGTGGCGGAGGAGCGAGCTTCGTGAAGGTGAGCATGGACGGAGCTCCGTACCTGAGGAAGGTTGACCTGAAGATGTACGGA AGCTACAGAGAGCTGTCGGATGCGTTGACCAAGATGTTCGGTTCGGTGAAGGAGAGCAATGACTACGTCCCGACCTATGAGGACAAGGACGGCGACTGGA TGCTCGTCGGCGATGTTCCGTGGGGGATGTTTGTGGAATCTTGCAAGCGGCTTCGCATCATGAAGAGCAACGAGGCAATTGGGCTTGCACCAAGAGCCAT GGAGAAGCGTAAGAACATGAGCTAG
AA sequence Show only first row Show all	>Lus10024854 pacid=23178830 polypeptide=Lus10024854 locus=Lus10024854.g ID=Lus10024854.BGIv1.0 annot-version=v1.0 MEVEIMRFDETELRLGLPGGGGGGELLAAHEVVGSTPTTPTTAHLMIRKRGFSETVDLQLNLSSSPAKDAAAPAKSEDCTSAGTPEKMEKNISLLQGQES AAAADLATSKPPPAKAQVVGWPPVRSFRKNMVSSAAVQKSTNNKTTSNKDGVSAAESEHKAAAPAAPSAAVAASGGGASFVKVSMDGAPYLRKVDLKMYG SYRELSDALTKMFGSVKESNDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIMKSNEAIGLAPRAMEKRKNMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	0	1
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Lus10036524 [exp]	1.0	0.9734
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10033651 [exp]	2.0	0.9699
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10018766 [exp]	4.2	0.9708
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	4.2	0.9708
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042378 [exp]	4.9	0.9545
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10018765 [exp]	5.0	0.9698
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10008603 [exp]	5.7	0.9565
AT3G24450			Heavy metal transport/detoxifi...		Lus10017730 [exp]	6.5	0.9644
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	6.9	0.9407
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10006451 [exp]	7.7	0.9358

Compare expression of checked genes

Lus10024854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.