Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54650 523 / 0 FBL17 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018767 [exp] 831 / 0 AT3G54650 618 / 0.0 RNI-like superfamily protein (.1) Lus10024856 [exp] 750 / 0 AT3G54650 634 / 0.0 RNI-like superfamily protein (.1) Lus10018769 [exp] 575 / 0 AT3G54650 520 / 0.0 RNI-like superfamily protein (.1) Lus10018768 [exp] 261 / 2e-82 AT3G54650 216 / 1e-64 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G044800 [exp] 609 / 0 AT3G54650 561 / 0.0 RNI-like superfamily protein (.1) Potri.005G218400 [exp] 593 / 0 AT3G54650 546 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10024855 pacid=23178994 polypeptide=Lus10024855 locus=Lus10024855.g ID=Lus10024855.BGIv1.0 annot-version=v1.0 ATGCATCCCCACCCGCACCCTCACATCCCCCAGCCCCATATTGCCCCGGCGACCCCAGGTGGATCCACCACGTCCTACTCCTCCTTTGACTTCAGCAAGA AGAAGCAGCATCGCGGCAGCTACAACTGTGGTAGATGTGGCCTCCCGAAGAAAGGCCACGTCTGCCACCTACCTCCGCCGCCGTCCACTTCAGACGACGT AGATGCCTCTCCCCTCGCCGTGGTCACGCCTTTCGATACCATATCGGCATCCGTCTCCTCTTCATCCCGTCCTGCTCCCCCGCCGGCATCGTTGTCTTCT TCAGCTCGGTGTGTGAATCTCCGGAGAGCACTATCGTTTGACGATATGGATACGAGGTGCGACTCTCCGGAGGTAGATGTGTTTGGCCCCGAGCTGGATC TGGAAGGATCGGACTCCGGGGGATTGCCGTCGGGCTTGATGTGGGAGGTTTTGAGGAGACTGCCGCCGGCTGGGTTGATAGCTGCGGCGGCGGTGTGCAA GGGGTGGCGGGACACTGCTAAGGGGTTGTGGAGAGCTGCGGAGGAGCTCAGGGTTATAGTTCCTCCTAGATCTCAGCTAGGGTTTGTTGGATCTCTGTTG CAGAAGTGCCCTGGACTTGTTAGACTCAGTCTTAGTATGAAAAGCGATGAGTTAGGTCGTTTTGTTGCTGACAAACGTTGCCTCACAACCCTCAAGATGG AAGGTTGCTCTAATCTAGGTGGTTTTGTTCTCAGTTCGTCGAGTCTGTCTACACTTTGGCTTTCTGATCTTCATTCTCTTTCCAAAATGGTATTTAATTG CCCCAATATGAGAGAGATTTCTCTGGGGTTTTCTCGCCAGGAAAATGACACAACTGATCTTGTAGGAATGGTTGACAAGCTGGGTATGTTTTGTACTAGG TTGCAGAACATTCACATAGCATCTGTTAGGCTTTCCAATGCTGCTGTTCTTGCACTTACAGCTGCGAAGTTAAGGTGTCTTCGCATGCTTTCTCTTGTGC TTGGAGCCGATATCACTGATGCATCTGTTGCTGCCATTTCGTCATGTTATTCAAAACTAGAACTTCTCGACCTCAGTGGGTCTAGCATTACTGATAGTGG CATTGGCATGATCTGCAATGTATTTCCTGCAACACTGTCAAGACTGCTCTTAGCTCTTTGTCCTAACATAACTTCCAGTGGAATTCAGTTTGCTACAGCT CAGTTACCTCATCTTGAACTCATGGATTGTGGCTTGACAATTTGTGACCCAAGTTCTGATAGTCTAACCAGTGATGGAAACAGCGACTTCGAATTGCATG AAAACAAATCACACCTCGTATATCAGAAGCTGATTGTCAAGCATGCCCGGCTGAGAAAGCTCAGTCTGTGGGGCTGCTCTGGTTTGGATGCACTATACCT TAATTGTCCGAAACTCAATGATCTGAATCTCAACTCCTGTAGAAACTTGCATACGGAGAGATTGCTCCTTGAATGCCCAAGTCTGGAAAGTGTTCATGCA TCAGGGTGTCACAAATTGTTGATTGCCAACATCCATAAGCAGGTAAACTTTATCAAATCATATTGA
AA sequence Show only first row Show all	>Lus10024855 pacid=23178994 polypeptide=Lus10024855 locus=Lus10024855.g ID=Lus10024855.BGIv1.0 annot-version=v1.0 MHPHPHPHIPQPHIAPATPGGSTTSYSSFDFSKKKQHRGSYNCGRCGLPKKGHVCHLPPPPSTSDDVDASPLAVVTPFDTISASVSSSSRPAPPPASLSS SARCVNLRRALSFDDMDTRCDSPEVDVFGPELDLEGSDSGGLPSGLMWEVLRRLPPAGLIAAAAVCKGWRDTAKGLWRAAEELRVIVPPRSQLGFVGSLL QKCPGLVRLSLSMKSDELGRFVADKRCLTTLKMEGCSNLGGFVLSSSSLSTLWLSDLHSLSKMVFNCPNMREISLGFSRQENDTTDLVGMVDKLGMFCTR LQNIHIASVRLSNAAVLALTAAKLRCLRMLSLVLGADITDASVAAISSCYSKLELLDLSGSSITDSGIGMICNVFPATLSRLLLALCPNITSSGIQFATA QLPHLELMDCGLTICDPSSDSLTSDGNSDFELHENKSHLVYQKLIVKHARLRKLSLWGCSGLDALYLNCPKLNDLNLNSCRNLHTERLLLECPSLESVHA SGCHKLLIANIHKQVNFIKSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10024855 [exp]	0	1
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	2.4	0.9313
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	8.4	0.9294
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	9.2	0.9290
AT3G54750			unknown protein		Lus10016201 [exp]	10.4	0.9204
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10024856 [exp]	13.5	0.9202
AT3G53320			unknown protein		Lus10019909 [exp]	14.6	0.8658
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	16.4	0.9204
AT5G55830			Concanavalin A-like lectin pro...		Lus10016620 [exp]	16.4	0.9237
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10019336 [exp]	17.1	0.9157
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10032439 [exp]	17.2	0.9193

Compare expression of checked genes

Lus10024855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.