Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54650 528 / 3e-177 FBL17 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018767 [exp] 764 / 0 AT3G54650 618 / 0.0 RNI-like superfamily protein (.1) Lus10018769 [exp] 756 / 0 AT3G54650 520 / 0.0 RNI-like superfamily protein (.1) Lus10024855 [exp] 667 / 0 AT3G54650 548 / 0.0 RNI-like superfamily protein (.1) Lus10018768 [exp] 342 / 1e-108 AT3G54650 216 / 1e-64 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G044800 [exp] 645 / 0 AT3G54650 561 / 0.0 RNI-like superfamily protein (.1) Potri.005G218400 [exp] 630 / 0 AT3G54650 546 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10024856 pacid=23178944 polypeptide=Lus10024856 locus=Lus10024856.g ID=Lus10024856.BGIv1.0 annot-version=v1.0 ATGCATCCCAATCCCCACCCTCACCCTCAGCCCCACATTTCCCCGGCGACCCCAGGCGGATCCACCGCCTCCTTCTCATCCCTCTTCTTCAGCAAGAAGA AGCACCGCGGCAGCTACAACTGCGGCAGATGTGGCCTCCCGAAGAAAGGCCACGTCTGCCACCTACCCCCGCCGCCGTCCGATTCCACAGCTGACGATGC CTCGCCCCTCGCCGTCCACACTCCTTCCGCCGCCACACCATCGGTCTACCTCTCCTCCTCATCGTCTCGTGCTCTGCCGCCGACGTCATCGTCTTCTTCG AAGCGGTGCTCGTCGAATCTCAGGAGAGCGTTATCGTTTGACGATATGGATACGAGGTGTGACTCTCCCGAGGTAGAGGTGTTCGGTTCCGAGCTGGATC TGGAAGGATCGGGATCCAGGGGATTGCCGTCGAGCTTGATGTGGGAGGTTTTGAAGAGACTGCCGCCGGCTGGTTTGATGGCTGCGGCGACGGTGTGTAA GGGGTGGAGGGACACTGCTAAGGGGCTGTGGAGAGCTGCGGAGGAGCTCAGGCTTACAGTTCCTCCTAGATCTCAGCTAGGGCTTGTTGGATCTGTGTTG CAGAAGTGTCCTGGACTTGTTAGACTCAGCCTTAGGATGGAAAGTGATGTTGAAGCAACGATGTTGGCTTGCATAGCGTTTTCATGTCCCAATCTGGAGT CCATGGAGATACGCATGACGGATGCAGCAGTCAACCGCATCACAGGCAATGAGTTAGGTCGTTTTGTTGCTGACAAACGTTGCCTCACAACCCTTAAGAT GGAAGGATGCTCTAATCTCGGGGGTTTTGTTCTCTGTTCGTCGAGTCTATCTACCCTTTGGCTTTCACATCTTCATTCTCTTTCTAAAATGGTATTTAAT TGCCCCAGTATGAGAGAGATTTCTCTGGGTTTTTCTCCCCAGGAAAATGATACAACTGATCTTGTGGGAATGGTTGAAAATTTGGGTAGGAGTTGTAGTA GGTTGCAGAACATTCACATTTCATCTGTTAGGCTTTCCAATGCCGTTGTGCTAGCACTTACAGCTGCGAACTTAAGGTGTCTTCGCATGCTTTCTCTTGT GCTTGGAGCCGATATCACTGATGCATCTGTTGCTGCCATTTCGTCATGTTATTCAAAACTAGAACTTCTCGACCTGAGTGGATCTAGCATTAGTGATAGT GGTATTGGAATGATCTGCAACGTATTTCCTGGAACAATGTCAAGACTGCTCCTAGCTCTTTGTCCTAACATCACTTCCAGTGGAATTCAGTTTGCTACAG CTCAATTACCTCATCTTGAACTCATGGATTGTGGCTTGACAATTTGTGACCCAAGTTCTGATAATCCAACCAGCGATGGAAACAGCGACTTTGAGTTGCA GACGACATTTGAAAACAAATTGCACCTCGTATATCAGAAGCTGATTATCAAGCATGCCCGGCTGAAAAAACTCAGTCTATGGGGTTGTTCTGGTTTGGAT GCACTATACCTTAATTGTCCAAAACTCAATGATCTGAACCTTAACTCCTGTAGAAACTTACATCCAGAGAGATTGCTCCTTGAATGCCCAAGTTTGGAAA GCATTCATGCATCGGGTTGTCGCAAATTGTTGATTGCAAACATCCACAAGCAGGCAAGTGTGGACAATGATAGTAGCTGCAGTACTCCATCTGGCAAATC TAATTACCCCAACAAAAGGACTTTGGAAGGTTCATCAAAGAGGGTCTGGGCGCCCTACGAGCTTGGACATCAGCTGCAGCATCAGGGTGGCGACGATGAT AACTATAAGAAGAGGAGAAGAGTGGGGAAATCAGAGGTAGAGGTGTTTGGTCCCGAGCTGGATCTGGAAGAATCAGCCTCCGGGGGATTGCCGTCGAGCT TGATGTGGGAGGTTTTGAGGAGACTGCCGCCAGCTGGGTTGATAGCTGCGGCGGCGGTGTGCAAGGTGTGGAGGGACACTGCTAAGGGGCTGTGGGAAGC TGCGGAGGAACTCAGGCTTATAGTTCCTCCTAAATCTCAGCTAGGGTTTGTTGAATCTGTAGTGCAGAAGTGTCCTGGACTTGTTAGACTCTATCTTAGG ATGGAAAGTGATTTCGAAGCATTGATGCTGGATTGCATAGCGGCTTCTTGTCCCAATCTGGAGTCCTTGGAGGTATGCATGATGGATCCAGCAGTCAATC GCATCACAGGCGATGATTTCACAACCTTTAAGATGGAAGGTTGCTCTAATCTAGGGGGTCTTGTTCTCTGTTCGGTGAGGCTATCTATACTTTGGCTTTC TGATCTTCATTCTCTTTCCAAAATGGTATCGTTCTATTACTTTCACTTGCTATCATCTCAATTGAAGATTTCACTTCTAAAAAAATTGGCATTTGTGTTC CAATGCATAATTTGGTTGCAGAACATTCGCATTTCATCTGCTAGGCTTTCCAATGCCGTTGTGCGTGCACTTACAGCTGCAAAGTTTAGGTCTCTTGGCT TTCTTTCTCTTGGGCATGGAGCCGATATCACTGATGCATCGGTCGCTGCCATTTCAAAACGTTATTCAATTCTATATCTTCTCGACCTCAGTATTACTGA TAGTGGTATTCGAATGATCTGCAAAGTATTTCCCGACACACTGTCGAAATTGCACTTAGCTCTTTGTCCTAACATCACTTCCAGTGGAATCCAGTTTGCT ACAGATGAGTTATCTTATCTTGACTACATGGATTGTGGCTTGAAAATTTGTGACCCAACTTCTCGTACTCAAAGTTGTCTAACCGGTCATGGAAACAGCG ACTTTAAATTGCATACGACATTTGAAAACAAATCGCTGCTCATATATCCGAAGCTGATTGTCAATACACCGCACCACAGTGCCACTCATGTCTCTCGTGA TATCACCGCCAGCATTCTAGGGAAACACGACCTTCTCCGACGATTCAGCTTAGTCTGA
AA sequence Show only first row Show all	>Lus10024856 pacid=23178944 polypeptide=Lus10024856 locus=Lus10024856.g ID=Lus10024856.BGIv1.0 annot-version=v1.0 MHPNPHPHPQPHISPATPGGSTASFSSLFFSKKKHRGSYNCGRCGLPKKGHVCHLPPPPSDSTADDASPLAVHTPSAATPSVYLSSSSSRALPPTSSSSS KRCSSNLRRALSFDDMDTRCDSPEVEVFGSELDLEGSGSRGLPSSLMWEVLKRLPPAGLMAAATVCKGWRDTAKGLWRAAEELRLTVPPRSQLGLVGSVL QKCPGLVRLSLRMESDVEATMLACIAFSCPNLESMEIRMTDAAVNRITGNELGRFVADKRCLTTLKMEGCSNLGGFVLCSSSLSTLWLSHLHSLSKMVFN CPSMREISLGFSPQENDTTDLVGMVENLGRSCSRLQNIHISSVRLSNAVVLALTAANLRCLRMLSLVLGADITDASVAAISSCYSKLELLDLSGSSISDS GIGMICNVFPGTMSRLLLALCPNITSSGIQFATAQLPHLELMDCGLTICDPSSDNPTSDGNSDFELQTTFENKLHLVYQKLIIKHARLKKLSLWGCSGLD ALYLNCPKLNDLNLNSCRNLHPERLLLECPSLESIHASGCRKLLIANIHKQASVDNDSSCSTPSGKSNYPNKRTLEGSSKRVWAPYELGHQLQHQGGDDD NYKKRRRVGKSEVEVFGPELDLEESASGGLPSSLMWEVLRRLPPAGLIAAAAVCKVWRDTAKGLWEAAEELRLIVPPKSQLGFVESVVQKCPGLVRLYLR MESDFEALMLDCIAASCPNLESLEVCMMDPAVNRITGDDFTTFKMEGCSNLGGLVLCSVRLSILWLSDLHSLSKMVSFYYFHLLSSQLKISLLKKLAFVF QCIIWLQNIRISSARLSNAVVRALTAAKFRSLGFLSLGHGADITDASVAAISKRYSILYLLDLSITDSGIRMICKVFPDTLSKLHLALCPNITSSGIQFA TDELSYLDYMDCGLKICDPTSRTQSCLTGHGNSDFKLHTTFENKSLLIYPKLIVNTPHHSATHVSRDITASILGKHDLLRRFSLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10024856 [exp]	0	1
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10020576 [exp]	1.7	0.9572
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	4.9	0.9469
AT5G52910		ATIM	timeless family protein (.1)		Lus10038831 [exp]	5.7	0.9527
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10036983 [exp]	7.5	0.9413
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10015267 [exp]	8.5	0.9378
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10004295 [exp]	11.0	0.9447
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10043134 [exp]	12.6	0.9432
AT5G55820		WYR	WYRD, unknown protein		Lus10022519 [exp]	12.7	0.9423
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10024855 [exp]	13.5	0.9202
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10036743 [exp]	15.5	0.9159

Compare expression of checked genes

Lus10024856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.