Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54660 862 / 0 ATGR2, EMB2360, GR glutathione reductase (.1) AT3G24170 486 / 2e-167 ATGR1 glutathione-disulfide reductase (.1.2.3) AT3G16950 164 / 2e-43 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.2) AT4G16155 159 / 2e-41 dihydrolipoyl dehydrogenases (.1) AT1G48030 152 / 1e-39 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G17240 143 / 1e-36 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT3G09940 48 / 2e-05 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2) AT1G63940 46 / 6e-05 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018770 [exp] 1054 / 0 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10011734 [exp] 494 / 1e-170 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10000758 [exp] 451 / 2e-154 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10037741 [exp] 149 / 3e-38 AT3G16950 928 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10017102 [exp] 148 / 3e-38 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037825 [exp] 147 / 7e-38 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 145 / 3e-37 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 145 / 4e-37 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10016877 [exp] 144 / 2e-36 AT3G16950 920 / 0.0 lipoamide dehydrogenase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G037800 [exp] 891 / 0 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.003G178200 [exp] 499 / 9e-173 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.001G050000 [exp] 496 / 2e-171 AT3G24170 857 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.010G142100 [exp] 157 / 3e-41 AT3G16950 895 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G107600 [exp] 154 / 6e-40 AT3G16950 877 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G100800 [exp] 148 / 3e-38 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G151400 [exp] 110 / 1e-25 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.001G099600 [exp] 47 / 4e-05 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0608 [flax] [poplar] Reductase_C PF02852 [flax] [poplar] Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10024857 pacid=23178837 polypeptide=Lus10024857 locus=Lus10024857.g ID=Lus10024857.BGIv1.0 annot-version=v1.0 ATGGCTGCCACCTCTCTCACCGCTGCTCCAAAGCTCACTTTCTCCCCAACTTTCCAGTCCCTCTACAGAAACCTCCCCATCATCTCTCTGTCTTCTTCTT CATCCTTTTCTTTCATCTCCCTCCGCAAAACCCTACCCTTCCACCACAAACCCCTCTCTGTGCCTCTCTGCCAACAACATTCACGCAGTCGCCGTTTTAC CGCTCGCGCAGAGACTGACAACGGCGCCGAGCCCCCCCGTCACTACGATTTCGACCTCTTCACCATCGGCGCCGGCAGCGGCGGCGTCCGTGCCTCCCGC TTCGCTTCCAATTTCGGCGCCTCCGTCGCCGTCTGTGAGCTCCCGTTCTCCACCATTTCCTCCGACACCGCCGGAGGCGTCGGCGGCACGTGTGTTCTTC GAGGATGCGTGCCGAAGAAATTGATGGTGTACGCGTCAAAATACTCGCACGAGTTCGAAGAGAGCAATGGGTTCGGATGGAAATATGAAAGTGAGCCAAA GCATGATTGGAGTACTCTCATGGCTAACAAGAATGCCGAGCTGCAACGACTCACTGGTATCTACAAGAACATTCTAAAAAATGCTAATGTCACCCTTATT GAAGGCAGAGGAAAGATTGTTGATCCGCACACAATTGACGTCGATGGAAAAATATACACAGCAAAGCACATATTGGTGTCAGTTGGGGGGCGGCCTTTCA TCCCTGACATTCCTGGAAAGGAATATGTAATTGATTCAGATAGAGCGCTTGATCTGCCATCTCCACCTAAGAAAATTGCGATAGTCGGTGGGGGTTACAT AGCGTTGGAGTTTGCTGGCATTTTCAATGGGTTGAAAAGTGAAATTCATGTATTTATAAGGCAGAAGCAAGTACTAAGGGGGTTCGATGAAGAGGTTAGG GATTTTGTTTCAGAGCAAATGTCTGTTAGAGGAATTGAGTTCCACGCAGAAGAATCACCGCAAGCTGTTATTAAATCCAGTGATGGTTCACTATCGTTGA AGACTAATAAAGGGACATCGGAGGGTTTCTCACACGTAATGTTTGCTACAGGACGTAGACCCAACACAAAGGTTGAATCCCTTGCGCTGGTCTTACTAGC AACCTCAAATGTTGTTTATATTTGGAAGAATAGGGTGATGACAACTTCTTTTGCATTGCAGAATTTGGGACTGGAAGAGGTTGGGGTCAAGATTGCTAAG AACGGAGCAATTGAGGTGGATGAATACTCCCGTACAGCTGTTCCGTCCATTTGGGCAGTTGGAGATGTTACAGATAGGATCAATTTGACTCCAGTTGCTT TGATGGAAGGGATGGCATTGGCGAAAACCCTGTTCAAGGATGAACCATCAAAACCTGATTACAGGGCTGTTCCTGCTGCTGTTTTCTCCCAGCCACCAAT CGGAACTGTGGGTCTTAGCGAAGAGCAGGCAACAAACGAGTATGGCGATGTTGATGTCTACACATCTAATTTTAGGCCTTTAAAGGCAACTCTATCGGGA CTTCCAGATCGGACCTTCATGAAATTATTAGTTTGTGCTAAGTCAGACAAAGTTCTAGGCCTACACATGTGTGGAGATGATGCACCTGAAATCGCCCAGG GCTTTGCAGTTGCTATCAAAGCAGGGTTGAAAAAAGCAGATTTCGATACTACAGTTGGTATTCATCCAACTGCTGCTGAGGAATTTGTGACTATGAGGAC ACCAACCCGTAAGATTCGAGAAGGTCCCAAATCTGAGGGAGCAGAAGACCCCAAAGTTAAAGCTGCTGGTGGAGTTTAG
AA sequence Show only first row Show all	>Lus10024857 pacid=23178837 polypeptide=Lus10024857 locus=Lus10024857.g ID=Lus10024857.BGIv1.0 annot-version=v1.0 MAATSLTAAPKLTFSPTFQSLYRNLPIISLSSSSSFSFISLRKTLPFHHKPLSVPLCQQHSRSRRFTARAETDNGAEPPRHYDFDLFTIGAGSGGVRASR FASNFGASVAVCELPFSTISSDTAGGVGGTCVLRGCVPKKLMVYASKYSHEFEESNGFGWKYESEPKHDWSTLMANKNAELQRLTGIYKNILKNANVTLI EGRGKIVDPHTIDVDGKIYTAKHILVSVGGRPFIPDIPGKEYVIDSDRALDLPSPPKKIAIVGGGYIALEFAGIFNGLKSEIHVFIRQKQVLRGFDEEVR DFVSEQMSVRGIEFHAEESPQAVIKSSDGSLSLKTNKGTSEGFSHVMFATGRRPNTKVESLALVLLATSNVVYIWKNRVMTTSFALQNLGLEEVGVKIAK NGAIEVDEYSRTAVPSIWAVGDVTDRINLTPVALMEGMALAKTLFKDEPSKPDYRAVPAAVFSQPPIGTVGLSEEQATNEYGDVDVYTSNFRPLKATLSG LPDRTFMKLLVCAKSDKVLGLHMCGDDAPEIAQGFAVAIKAGLKKADFDTTVGIHPTAAEEFVTMRTPTRKIREGPKSEGAEDPKVKAAGGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	0	1
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Lus10031272 [exp]	1.0	0.9300
AT4G13150			unknown protein		Lus10038175 [exp]	1.4	0.8966
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10034288 [exp]	2.6	0.8832
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10041385 [exp]	3.0	0.8960
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	4.5	0.8935
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036543 [exp]	5.9	0.8869
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	6.9	0.8846
AT3G62060			Pectinacetylesterase family pr...		Lus10009966 [exp]	7.1	0.8528
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	7.4	0.8767
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036542 [exp]	8.4	0.8685

Compare expression of checked genes

Lus10024857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.