Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06780 608 / 0 GAUT6 galacturonosyltransferase 6 (.1.2) AT2G30575 563 / 0 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT5G47780 493 / 6e-169 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 428 / 1e-142 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 392 / 1e-128 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G46480 316 / 6e-101 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT1G18580 306 / 6e-97 GAUT11 galacturonosyltransferase 11 (.1) AT3G25140 305 / 2e-96 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 301 / 6e-95 GAUT9 galacturonosyltransferase 9 (.1) AT2G20810 295 / 6e-93 GAUT10, LGT4 galacturonosyltransferase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018773 [exp] 1083 / 0 AT1G06780 639 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10014750 [exp] 784 / 0 AT1G06780 611 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10033861 [exp] 723 / 0 AT1G06780 568 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10038739 [exp] 462 / 6e-156 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10041389 [exp] 421 / 3e-140 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 418 / 1e-138 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 417 / 6e-137 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 400 / 4e-127 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 369 / 3e-112 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G218900 [exp] 679 / 0 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2) Potri.016G001700 [exp] 494 / 1e-168 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 450 / 3e-152 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 424 / 9e-141 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 422 / 3e-140 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 407 / 3e-134 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.017G106800 [exp] 310 / 2e-98 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.004G111000 [exp] 307 / 3e-97 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.002G246500 [exp] 305 / 2e-96 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.015G060800 [exp] 304 / 3e-96 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10024859 pacid=23178983 polypeptide=Lus10024859 locus=Lus10024859.g ID=Lus10024859.BGIv1.0 annot-version=v1.0 ATGAAGGCGGCGGCCCGTAGAAGGCAGAGGAATTTCATCCTCTGTTTCCTCTCTGTCTCTGTGCTTGCTCCGATCGTCTTCCTCTCCAATGCTGGTGGCA GTTTCTTCTCTTCTTTCGAAAAGAGAGGGTTCGGTCATGACATTTCAAATCTGAAATATAGAGCAGTTACCCTGAAGCTCCGTGCAATTGAGGAGGAAGC AAATGAAGGCTTGAAAGAACCACAGCGGATTGTTTACCAACAGAAGGATTTGAGGTCTATTATTCGTTTAGCTACTGTTAATGTCAATAGTCATTCTAAG CAGAAGAGTTCTGACGACATGAATGATTTAAGGAAACCCGCCAATACTGGAGAGAAGAATAGTCTCTTGAGCAGTAAGAGAAGTCCGAACGACCAAAGCA AAAGACCTGCTCCTCAGAAAGGAACAGACGTGAAGATAAAGGAGATGCAAGATAAGATCATTCAGGCTAGAGCGTACTTGAGTCTTTCACCACCTGGGAG CAACTCCCACCTAGTCAAAGAATTGAAGCTGCGAATAAAAGAATTAGAACGTTATTCCAGCCGTGTTAGCAAAGACACAGATCTACACAGGAGCGCACTA CAGAAATTGAAAGCCATGGAATTCACCTTGTTCAAAGCCAGCCGAGTCTACAAAGACTGTACCGCCATGGCCAAGAAGCTCCGTGCTATGACTTACACTG CTGAGGAACAGGTTCAAGCGCATAAAAATGAAGCAGCATATCTTCTAAGACTGGCAGCAAGAAGTACACCAAAAGGCTATCATTGCCTTTCCCTGCGGCT GACTTCTGAATACTTTTCCTTGTCACCAGAGGAGAGGCAGTTCCCTAATCAGCAAAGAGTGGATGATCCCAGTCTCCACCATTATGCTGTTTTCTCGGAC AATATTCTGGCTTCTGCAGTAGTTGTGAATTCTACAGTCTCCTCTGTTCAGGATTCAGGGAAGGTCGTTTTCCATGTGGTGACAAATTCCCTGAACCTCC CGGCGATCTCGATGTGGTTCTTGTCATATCCTCCTGTGAACGCTACAATCCACGTCCAGAGCGTTGAAAACTTCCAAGGGTTGTCGGCCAACAACTACAG CTCGATACTGAAGAAGCAAATTTCCAGCGACCCGAGATACACTTCCGAGTTGAACCACTTGCGATTCTATCTCCCAGATTTGTTCCCCAAGCTGAACAAG GTCGTGCTATTTGACCACGACATCGTGGTGAGAAAGGATCTGTCAGGACTTTGGGATCTCGACTTGAAAGGGAAAGTCAACGGAGCGGTGGAAACTTGCC GTAATGACGGTGACCCTTCTTTCCGGCGTATGGATATGTTTATAAATTTCTCAGATCCGTATGTTGCAAAGAAATTCAACGCAAGAGCATGCACATGGGC GTTTGGGATGAATCTGTTTGACCTTAAAGAGTGGAGGAGACAAGATTTAACTTCTGTCTACCATCACTACTTGAGACTGGGGAGCAAGAGACCGATGTGG AAATCAGGGAGCCTGCCACTAGGGTGGGCGACCTTCTACAACTCGACGGTTGCGATAGACAAGAGATGGCACAGGCTGGGGCTAGGGTACGAGTCAGGGG TGGAGGTTGGTGATGCAGCGGTGTTACACTACGACGGAGTGATGAAACCATGGCTAGATATCGGGATACCAAAGCACAAGGGTTACTGGACCGCCTTCCT CAACTACGAGAATCCACATTTCCAGCAATGCAATATCCATCAGTGA
AA sequence Show only first row Show all	>Lus10024859 pacid=23178983 polypeptide=Lus10024859 locus=Lus10024859.g ID=Lus10024859.BGIv1.0 annot-version=v1.0 MKAAARRRQRNFILCFLSVSVLAPIVFLSNAGGSFFSSFEKRGFGHDISNLKYRAVTLKLRAIEEEANEGLKEPQRIVYQQKDLRSIIRLATVNVNSHSK QKSSDDMNDLRKPANTGEKNSLLSSKRSPNDQSKRPAPQKGTDVKIKEMQDKIIQARAYLSLSPPGSNSHLVKELKLRIKELERYSSRVSKDTDLHRSAL QKLKAMEFTLFKASRVYKDCTAMAKKLRAMTYTAEEQVQAHKNEAAYLLRLAARSTPKGYHCLSLRLTSEYFSLSPEERQFPNQQRVDDPSLHHYAVFSD NILASAVVVNSTVSSVQDSGKVVFHVVTNSLNLPAISMWFLSYPPVNATIHVQSVENFQGLSANNYSSILKKQISSDPRYTSELNHLRFYLPDLFPKLNK VVLFDHDIVVRKDLSGLWDLDLKGKVNGAVETCRNDGDPSFRRMDMFINFSDPYVAKKFNARACTWAFGMNLFDLKEWRRQDLTSVYHHYLRLGSKRPMW KSGSLPLGWATFYNSTVAIDKRWHRLGLGYESGVEVGDAAVLHYDGVMKPWLDIGIPKHKGYWTAFLNYENPHFQQCNIHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10024859 [exp]	0	1
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	2.8	0.9619
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	3.2	0.9597
AT2G46890			Protein of unknown function (D...		Lus10009861 [exp]	4.0	0.9403
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10037096 [exp]	4.2	0.9493
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10004522 [exp]	4.9	0.9484
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	7.3	0.9418
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Lus10036887 [exp]	9.5	0.9352
AT3G52020		SCPL39	serine carboxypeptidase-like 3...		Lus10039582 [exp]	11.8	0.9231
AT1G14890			Plant invertase/pectin methyle...		Lus10037919 [exp]	12.2	0.9199
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10036886 [exp]	14.1	0.9310

Compare expression of checked genes

Lus10024859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.