Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64560 434 / 8e-152 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT5G09690 422 / 2e-147 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT3G58970 284 / 2e-92 MRS2-4, MGT6 magnesium transporter 6 (.1) AT1G80900 267 / 1e-85 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT1G16010 258 / 4e-82 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT5G09720 245 / 3e-79 Magnesium transporter CorA-like family protein (.1) AT5G09710 233 / 1e-73 Magnesium transporter CorA-like family protein (.1) AT2G03620 227 / 2e-70 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT4G28580 196 / 8e-59 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT3G19640 151 / 3e-41 MRS2-3, MGT4 magnesium transporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021887 [exp] 448 / 4e-157 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10008803 [exp] 431 / 2e-150 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10022218 [exp] 413 / 8e-141 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10015459 [exp] 272 / 1e-87 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10014353 [exp] 261 / 3e-83 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10026063 [exp] 261 / 4e-83 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10037081 [exp] 226 / 9e-71 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2) Lus10001373 [exp] 217 / 2e-67 AT3G58970 450 / 2e-158 magnesium transporter 6 (.1) Lus10025531 [exp] 186 / 9e-55 AT3G19640 407 / 8e-140 magnesium transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161400 [exp] 453 / 2e-159 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.010G077900 [exp] 453 / 2e-159 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.006G081700 [exp] 278 / 8e-90 AT3G58970 538 / 0.0 magnesium transporter 6 (.1) Potri.001G043200 [exp] 261 / 1e-83 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.003G183600 [exp] 258 / 4e-82 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.007G098200 [exp] 238 / 7e-75 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.008G096200 [exp] 231 / 4e-72 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.010G158100 [exp] 224 / 2e-69 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.007G098000 [exp] 162 / 1e-45 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.009G086300 [exp] 161 / 4e-45 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [flax] [poplar] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Lus10024860 pacid=23178851 polypeptide=Lus10024860 locus=Lus10024860.g ID=Lus10024860.BGIv1.0 annot-version=v1.0 ATGGAGAAGGAAGACGATCAAACTTCACTGAAGACCATGATGATGATGATGAAGAAGACGGCGACGGTATCCTCCACCTGGATGTCGCTTGACCGTACCG GCCGCGCCACCGTCATCGAAGCCGACAAGCAGGCTATCATGCGCCGGGTGCAGATTAACGCCCGCGATCTACGTATCCTCGACCCTATCCTCTCTTATCC CTCCGCCATACTCGGCAGGGGTAGAGTCATCGTCCTCAATCTGGAGCATATCAAAGCGATTGTCACGGCGGAGGAGGTACTGCTCAGAGATCCGATGGAA GAAGGAGTGGCTCCTATCGTTGAGCAATTCCGTAGCCGATTGCCTTCAGCGAACCATGGCCGAGAAGAAGAGGACGAGGAAGCGGATGATTCAGAGCAAA GCAACGAATTCGCGTTCGAATTCAGGGCACTGGAAGTAGCGCTTGAAGGAATATGCAGCCATTTGGAGGAACGGACTATTGAGCTGGAGACTGCTGCTTA TCCAGCACTGGACGAACTTACATCCAAGATTAGCAGTCGTAATCTGGATCGAGTGCGCAAGCTCAAAAGTTCAATGACAAGGCTCACTAACAGGGTCCAA AAGATAAGAGATGAACTTGAGCAGTTACTTGACGATGACGATGACATGGCAGAGCTCTACTTGTCGAGGAAGTTATCTGCACCAACTTCACCAACTACTA CGAACTTCGCTGCTCCGAACTGGGCTTTAACCTCTCCTACTGCTACTGTAACGTCCAGGGCTTCGAGGTTTGATAGAGCTAGCTCATTCCCAGCGGATGA AGAGCCTGATGTCGAAGAGCTCGAGATGTTGCTCGAGGCTTATTTCATGCAAATTGATGGCACATTGAACAAATTGTCCACGTTACGCGAATACATCGAT GACACAGAGGATTACATCAATATCCAGCTTGACAATCACAGAAATCAGCTAATTCAGCTGGAGCTATTTCTGAGTTCAGGGACTGTTTGTTTGAGTGTAT ATTCATTGGTGGCTGCAATATTCGGGATGAATATCAAGTATACATGGAAGGAAGGCCATGGATACATATTCAAATGGGTGGTGATGGTTACGAGCACGGT GTGCTCATCTCTGTTCCTAGTGATCTTGTTCTACGCCAGACAAAAGGGTCTTGTTGGGTCCTGA
AA sequence Show only first row Show all	>Lus10024860 pacid=23178851 polypeptide=Lus10024860 locus=Lus10024860.g ID=Lus10024860.BGIv1.0 annot-version=v1.0 MEKEDDQTSLKTMMMMMKKTATVSSTWMSLDRTGRATVIEADKQAIMRRVQINARDLRILDPILSYPSAILGRGRVIVLNLEHIKAIVTAEEVLLRDPME EGVAPIVEQFRSRLPSANHGREEEDEEADDSEQSNEFAFEFRALEVALEGICSHLEERTIELETAAYPALDELTSKISSRNLDRVRKLKSSMTRLTNRVQ KIRDELEQLLDDDDDMAELYLSRKLSAPTSPTTTNFAAPNWALTSPTATVTSRASRFDRASSFPADEEPDVEELEMLLEAYFMQIDGTLNKLSTLREYID DTEDYINIQLDNHRNQLIQLELFLSSGTVCLSVYSLVAAIFGMNIKYTWKEGHGYIFKWVVMVTSTVCSSLFLVILFYARQKGLVGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09690		MRS2-7, ATMGT7	ARABIDOPSIS THALIANA MAGNESIUM...		Lus10024860 [exp]	0	1
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Lus10040448 [exp]	2.2	0.8512
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	4.0	0.8506
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10033580 [exp]	7.6	0.8004
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	10.5	0.8450
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	11.7	0.8196
AT5G36930			Disease resistance protein (TI...		Lus10018616 [exp]	13.9	0.8446
AT3G28460			methyltransferases (.1)		Lus10005835 [exp]	15.0	0.8366
AT1G26260	bHLH	CIB5, bHLH076	cryptochrome-interacting basic...		Lus10023562 [exp]	19.0	0.8162
AT1G17430			alpha/beta-Hydrolases superfam...		Lus10012409 [exp]	21.0	0.8128
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10008082 [exp]	21.2	0.7941

Compare expression of checked genes

Lus10024860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.