Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08770 92 / 6e-23 PRA1.E prenylated RAB acceptor 1.E (.1) AT3G13720 89 / 4e-22 PRA8, PRA1.F3 PRENYLATED RAB ACCEPTOR 1.F3, PRA1 (Prenylated rab acceptor) family protein (.1) AT1G55190 88 / 1e-21 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT5G05380 80 / 2e-18 PRA1.B3 prenylated RAB acceptor 1.B3 (.1) AT1G17700 79 / 3e-18 PRA1.F1 prenylated RAB acceptor 1.F1 (.1) AT3G13710 78 / 6e-18 PRA1.F4 prenylated RAB acceptor 1.F4 (.1) AT2G38360 78 / 2e-17 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT1G04260 76 / 5e-17 PRA1.D, MPIP7, MPI7 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1) AT5G01640 71 / 6e-15 PRA1.B5 prenylated RAB acceptor 1.B5 (.1) AT2G40380 69 / 3e-14 PRA1.B2 prenylated RAB acceptor 1.B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018774 [exp] 231 / 2e-77 AT1G08770 130 / 5e-38 prenylated RAB acceptor 1.E (.1) Lus10014747 [exp] 178 / 1e-56 AT1G55190 147 / 9e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10033859 [exp] 170 / 1e-53 AT1G55190 149 / 1e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10021996 [exp] 105 / 3e-28 AT1G08770 162 / 3e-50 prenylated RAB acceptor 1.E (.1) Lus10042535 [exp] 99 / 1e-25 AT1G08770 157 / 1e-48 prenylated RAB acceptor 1.E (.1) Lus10034363 [exp] 93 / 2e-23 AT1G55190 197 / 1e-64 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10005088 [exp] 93 / 3e-23 AT1G55190 199 / 3e-65 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10015631 [exp] 86 / 6e-21 AT1G55190 193 / 7e-63 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10037649 [exp] 86 / 6e-21 AT1G55190 153 / 2e-47 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G219100 [exp] 161 / 3e-50 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G044000 [exp] 135 / 6e-40 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 124 / 1e-35 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 121 / 3e-34 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.003G035200 [exp] 93 / 1e-23 AT1G55190 161 / 2e-50 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.006G104400 [exp] 79 / 5e-18 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.019G124100 [exp] 78 / 8e-18 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.016G126400 [exp] 78 / 1e-17 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.010G183300 [exp] 67 / 9e-14 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.008G074000 [exp] 61 / 3e-11 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10024861 pacid=23178985 polypeptide=Lus10024861 locus=Lus10024861.g ID=Lus10024861.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCTTCTTCTTCTTCGCCTCCGGCGGCATCATACGGCTACGACCCATTTGCATCCTCATCACCAGTAACCTTCCTTACCCGCGCCGCCTCGA ATTCCACCGCCTTCTTCCCCACGCGCCGTCGGTGGCGCGAACTCCTAACCATCTCTGCCTTCTCCCGCCCTTTCTCCATCGGGGAAGCCGCCGTCCGAAT CAAACGAAATTCGGCCTACTTCCGCGTCAACTACGCCATAGCAGTACTCTTCGTCGTCTTCCTCAGCCTCCTCTGGCATCCTCTCTCCATGATCGTCTTC CTAATTGTCCTCTGCTTCGCCTGGTTCTTCCTCTTCTTCTTCCGCGACCAGCCCCTCGTCGTCTTCAACCGAACCGTCGACGACCGATTGGTACTCTCCC TGCTCGCCGCCGTCACGCTGCTCGCGTTGATTTTGACAGGTGGAGGGGTCTGGCTGAACGTGTTGGTCTCCGTTTCAATCGGGCTAGGGATTGTCGTATT ACACGCCGCGTTTCGAGGGACGGAGGATTTGTATTTGGACGAATTGGACGGCCACGGCGGCGGGTTGCTGTCGTTCGTCGGCGGCAGTCCTACCAAAAAT GGTTACTCTCCGATTTAA
AA sequence Show only first row Show all	>Lus10024861 pacid=23178985 polypeptide=Lus10024861 locus=Lus10024861.g ID=Lus10024861.BGIv1.0 annot-version=v1.0 MASASSSSPPAASYGYDPFASSSPVTFLTRAASNSTAFFPTRRRWRELLTISAFSRPFSIGEAAVRIKRNSAYFRVNYAIAVLFVVFLSLLWHPLSMIVF LIVLCFAWFFLFFFRDQPLVVFNRTVDDRLVLSLLAAVTLLALILTGGGVWLNVLVSVSIGLGIVVLHAAFRGTEDLYLDELDGHGGGLLSFVGGSPTKN GYSPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10024861 [exp]	0	1
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	8.4	0.7385
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10019444 [exp]	13.0	0.7122
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	15.0	0.7322
AT4G13270			Late embryogenesis abundant (L...		Lus10011095 [exp]	16.6	0.7441
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	17.3	0.6952
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008439 [exp]	18.9	0.7110
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10037789 [exp]	24.0	0.6866
AT4G32920			glycine-rich protein (.1.2.3)		Lus10000229 [exp]	25.5	0.6903
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020950 [exp]	27.3	0.6743
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	34.2	0.7142

Compare expression of checked genes

Lus10024861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.