Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49100 194 / 2e-65 Signal recognition particle, SRP9/SRP14 subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018775 [exp] 270 / 1e-94 AT3G49100 194 / 2e-65 Signal recognition particle, SRP9/SRP14 subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G043600 [exp] 187 / 1e-62 AT3G49100 199 / 5e-68 Signal recognition particle, SRP9/SRP14 subunit (.1) Potri.005G219400 [exp] 185 / 7e-62 AT3G49100 177 / 3e-59 Signal recognition particle, SRP9/SRP14 subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0623 [flax] [poplar] SRP9_14 PF05486 [flax] [poplar] SRP9-21 Signal recognition particle 9 kDa protein (SRP9)
Representative CDS sequence Show only first row Show all	>Lus10024862 pacid=23178844 polypeptide=Lus10024862 locus=Lus10024862.g ID=Lus10024862.BGIv1.0 annot-version=v1.0 ATGCTACTGTTTCAACAAGAATTTGACTGCGGGAATTTTGTTTTTGACAGCAGCTGGGAGATTGTTGTTGAGTTTCTCTCTATCTCTGTTCACTGTGGTT CACGACCAATGGTTTACATTACTTCCTGGGACGAGTTTGCGGAGCGAACGCTGCAGATGTTCCGTGCCGATCCAGACTCGACTCGGTACGTTATGAAGTA CAGACATAGTGAAGGCAAGCTGGTTCTCAAGGTTACTGACAACAAAGAGTGCCTCAAGTTTAAGACAGACCAGGCACAAGAGGCTAAGAAGATGGAAAAG CTAAATAACTTGTTCTTCACACTGATGGCTCGTGGTCCTGACGCGGATGTATCAGAAGTTGCAGGAAAAGAGCAGATGGATACACAGCCAGCAAAGAAAG GAAGGGGCCGTAAGCAATGA
AA sequence Show only first row Show all	>Lus10024862 pacid=23178844 polypeptide=Lus10024862 locus=Lus10024862.g ID=Lus10024862.BGIv1.0 annot-version=v1.0 MLLFQQEFDCGNFVFDSSWEIVVEFLSISVHCGSRPMVYITSWDEFAERTLQMFRADPDSTRYVMKYRHSEGKLVLKVTDNKECLKFKTDQAQEAKKMEK LNNLFFTLMARGPDADVSEVAGKEQMDTQPAKKGRGRKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49100			Signal recognition particle, S...		Lus10024862 [exp]	0	1
AT3G49100			Signal recognition particle, S...		Lus10018775 [exp]	4.5	0.8776
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	12.2	0.8522
AT3G18760			Translation elongation factor...		Lus10006729 [exp]	17.7	0.8402
AT2G07340		PFD1	PREFOLDIN 1 (.1.2)		Lus10021609 [exp]	18.4	0.7754
AT4G14320			Zinc-binding ribosomal protein...		Lus10038130 [exp]	18.9	0.8620
AT5G50810		TIM8	translocase inner membrane sub...		Lus10022450 [exp]	22.8	0.8474
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10034657 [exp]	23.2	0.8380
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10023131 [exp]	23.5	0.8237
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10011145 [exp]	24.2	0.8357
AT2G20450			Ribosomal protein L14 (.1)		Lus10008246 [exp]	25.7	0.8469

Compare expression of checked genes

Lus10024862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.