Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30590 233 / 5e-74 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT3G04670 201 / 3e-62 WRKY ATWRKY39, WRKY39 WRKY DNA-binding protein 39 (.1.2) AT5G28650 199 / 1e-61 WRKY ATWRKY74, WRKY74 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) AT4G31550 172 / 4e-51 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT2G23320 170 / 2e-50 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT2G24570 169 / 8e-50 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT4G24240 166 / 2e-48 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT3G58710 110 / 4e-28 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT1G29280 107 / 5e-27 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT2G34830 109 / 7e-27 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018776 [exp] 472 / 1e-168 AT2G30590 322 / 6e-109 WRKY DNA-binding protein 21 (.1) Lus10014745 [exp] 344 / 1e-117 AT3G04670 362 / 2e-124 WRKY DNA-binding protein 39 (.1.2) Lus10033857 [exp] 341 / 1e-116 AT3G04670 362 / 3e-124 WRKY DNA-binding protein 39 (.1.2) Lus10042538 [exp] 197 / 7e-61 AT5G28650 301 / 7e-102 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10021999 [exp] 196 / 1e-60 AT5G28650 297 / 4e-100 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10041600 [exp] 179 / 2e-53 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10010053 [exp] 171 / 2e-50 AT4G24240 303 / 1e-101 WRKY DNA-binding protein 7 (.1) Lus10020136 [exp] 167 / 3e-49 AT4G31550 401 / 8e-141 WRKY DNA-binding protein 11 (.1.2) Lus10026936 [exp] 167 / 3e-49 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G219500 [exp] 327 / 5e-111 AT2G30590 352 / 3e-120 WRKY DNA-binding protein 21 (.1) Potri.002G043500 [exp] 261 / 2e-85 AT2G30590 345 / 1e-117 WRKY DNA-binding protein 21 (.1) Potri.005G055300 [exp] 217 / 5e-68 AT3G04670 361 / 1e-124 WRKY DNA-binding protein 39 (.1.2) Potri.013G042600 [exp] 216 / 8e-68 AT3G04670 333 / 1e-113 WRKY DNA-binding protein 39 (.1.2) Potri.007G047400 [exp] 188 / 3e-57 AT4G24240 283 / 4e-94 WRKY DNA-binding protein 7 (.1) Potri.005G141400 [exp] 185 / 4e-56 AT4G24240 236 / 2e-75 WRKY DNA-binding protein 7 (.1) Potri.002G123300 [exp] 183 / 4e-55 AT4G24240 275 / 2e-90 WRKY DNA-binding protein 7 (.1) Potri.003G111900 [exp] 178 / 1e-53 AT2G30590 154 / 5e-44 WRKY DNA-binding protein 21 (.1) Potri.014G024200 [exp] 179 / 3e-53 AT4G24240 261 / 8e-85 WRKY DNA-binding protein 7 (.1) Potri.018G008500 [exp] 177 / 4e-53 AT4G31550 315 / 1e-106 WRKY DNA-binding protein 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10533 [flax] [poplar] Plant_zn_clust Plant zinc cluster domain CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10024864 pacid=23178941 polypeptide=Lus10024864 locus=Lus10024864.g ID=Lus10024864.BGIv1.0 annot-version=v1.0 ATGGAGGAAGTTGAGCAAGCTAATAGGGTAGCAATAGAGAGCTGCAATAGGCTATTGAGTTTGTTATCATCCCAGCAGCCTCAAGACTACAGGAATTTGA TGGTGGAAACTGGGGAGGCTGTGTCTAAGTTCAAGAAAGTTGTTTCACTTCTCAATACTGGTTTAGGTCATGCCAGGGTGAGGAAAGTCAACACCTTTCC ATCTTCTGCTTTGTCACATCATAACATTGTTTTGGATCATCAGAAGCAGCCTTCCAAGAGCCTTCAATTTCTACATCAGGAAATTGGCTCAACTTCTGCC AAGGCAGCACTTTCCTTGGGAAGTGGTGGAGGAAACCCTTCTTTGGAATTGAGCTCCAATGGGAAAAATGGTGCTCAACAGACAACAACATCATCGCATT ATCTGTTTCTTCATCAACAGCAGATGCAAAGGCTGCAGCTTGAACAGCGGCAGCAGCAAATGAAGCAGCAGGCTGAGATGATGTTTCGAAAGAGTAACAG TAGCGGGATCAGCTTGAGTTTTGATAATAGCGTTACAATGTCGTCTTCGAGGTCTTTCATGTCTTCCTTGAGTATGGACGGTAGCGTAGCTAACACAGTT GGGAGCGGTGCATTCAATTTGATCGGTGGTGTACCGCTGCATCACAAAAGGAAGTGTTGTGCAAAGGGGGAAGATGGGAGTGTGAAATGTGGGAGTTCTG GCAGGTGCCATTGTTCCAAGAAGAGGAAACATAGAGTGAAGAGGTCCATCAAGGTACCTGCAGTTAGCAACAAGCTTGCAGATATTCCTCCTGATGATTA TTCGTGGAGAAAGTACGGGCAGAAGCCGATCAAGGGTTCTCCTCACCCTAGGGGATACTACAAATGCAGCAGCATGAGAGGCTGTCCAGCGAGAAAACAC GTTGAAAGATGCCTGGAAGAACCATCAATGCTCATTGTTACATACGAAGGCGAACATAACCACCCGAGGATACCTTCCCAGTCTGCAAACACATAG
AA sequence Show only first row Show all	>Lus10024864 pacid=23178941 polypeptide=Lus10024864 locus=Lus10024864.g ID=Lus10024864.BGIv1.0 annot-version=v1.0 MEEVEQANRVAIESCNRLLSLLSSQQPQDYRNLMVETGEAVSKFKKVVSLLNTGLGHARVRKVNTFPSSALSHHNIVLDHQKQPSKSLQFLHQEIGSTSA KAALSLGSGGGNPSLELSSNGKNGAQQTTTSSHYLFLHQQQMQRLQLEQRQQQMKQQAEMMFRKSNSSGISLSFDNSVTMSSSRSFMSSLSMDGSVANTV GSGAFNLIGGVPLHHKRKCCAKGEDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAVSNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKH VERCLEEPSMLIVTYEGEHNHPRIPSQSANT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Lus10024864 [exp]	0	1
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10020487 [exp]	13.9	0.8209
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	15.5	0.7937
AT1G19270		DA1	DA1 (.1)		Lus10032736 [exp]	34.1	0.7460
AT1G72090			Methylthiotransferase (.1)		Lus10008262 [exp]	34.6	0.7388
AT5G01800			saposin B domain-containing pr...		Lus10014162 [exp]	34.6	0.7746
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10002556 [exp]	36.5	0.7300
AT4G31310			AIG2-like (avirulence induced ...		Lus10020179 [exp]	48.0	0.7678
AT3G52870			IQ calmodulin-binding motif fa...		Lus10003257 [exp]	49.7	0.7236
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10021300 [exp]	57.5	0.7479
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10030667 [exp]	58.8	0.7433

Compare expression of checked genes

Lus10024864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.