Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06730 492 / 1e-171 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 62 / 3e-10 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 61 / 4e-10 STH pfkB-like carbohydrate kinase family protein (.1) AT1G06030 61 / 8e-10 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 59 / 3e-09 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 59 / 3e-09 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 58 / 4e-09 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 56 / 2e-08 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018778 [exp] 861 / 0 AT1G06730 536 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 62 / 3e-10 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 60 / 1e-09 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 60 / 2e-09 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 59 / 5e-09 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 56 / 2e-08 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 50 / 3e-06 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 49 / 4e-06 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 49 / 6e-06 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220400 [exp] 585 / 0 AT1G06730 558 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.002G042700 [exp] 578 / 0 AT1G06730 546 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 65 / 4e-11 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 63 / 1e-10 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 61 / 6e-10 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 59 / 2e-09 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 57 / 8e-09 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 57 / 9e-09 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 50 / 2e-06 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10024866 pacid=23178878 polypeptide=Lus10024866 locus=Lus10024866.g ID=Lus10024866.BGIv1.0 annot-version=v1.0 ATGCATCACCTCGCCGCAGCTCCGCCTTTCAATCCTCTCCTCCCTTCTCATGGACTCCTCTTTTGTCCGAACCCTAGACTTTCGATTGTATGTTCGCCTC CCGCCGCCGTCGGACACTCACTCCGGTCCTCCTTCCTCGCCTGCCGAGCCGTCGACCTCTCTCCCTCGTCCCCCGCCAACTGCTCCACCTCTCTCCACAA CAACCGCCCAAACTCAGATTCTGAATTCCGGAATTCAAATTGTTCCAAGGTCGTCGATGTCTCCACACTTGGAAATCTCTGCGTGGACATCGTTCTTAAT GTCCCCGAATTGCCGCCTCCTCCCCGCGACGATCGCCTCGCGTACATGGAGCGCCTTTCAGCTTCTCCGCCGGATAAGCGATACTGGGAAGCTGGCGGAA ATTGCAATGTGGTTATAGCGGCAGCAAGGCTGGGACTTCGCTGCGCCACGATTGGCCATGTTGGCTCAGAGATGTATGGTCAGTTTCTATCGGATGTGCT TCGAGATGAGCGGATTCGAATGGTGGGAATGAGTGAGGATGGTGATGATGTCGTTGACACTTCAAGTGGCGCCTACGAGACACTTTTGTGTTGGGTTCTT GTTGATCCTCTTCACAGACATGGATTTTGTAGTCGAGCTGATTTCAGTGAGGATCCAGCGTTTAGTTGGATGAGTAAATTGTCGGGGGATGCAAAGATGG CTATTAAGCAATCAAAGGTTCTTTTCTGCAATGGTTATGGATTTGATGACTTCTCCCCTGGTGTGATTGTCTCGGCTCTGGATTATGCGGTCAAAGTTGG GACATCTGTTTTCTTCGATCCCGGTCCACGCGGAAGGAGTCTGTCTAAGGGAACAGAAGAAGAACGACAAGCACTGAAGCATTTATTGAGGATGAGTGAT GTTCTGCTTCTAACAAGTGATGAGGCTGAGTCGTTGACAGGCATAGGAAATCCAGTTCTAGCAGGGCAGGAATTGCTTAGAAATGGGGTACGCACAAAAT GGGTGATTGTCAAAATGGGTTCAAAGGGATCGATTTTAATCACTGCAACAAGTATATCATGTGCACCTGCGTTTAAGGTTGATGTCATTGACACAGTTGG TTGTGGAGATAGCTTCGTGGCAGCTGTTGCATTCGGTTACATACGCAATCTTCCCTTTGTAAATACCTTAGCTATTGCCAACGCAGTAGGTGCTGCAACT GCAACAGGATGTGGCGCTGGTCGTCACGTAGCAACCTTGGAGCGAGTAGTTGACATTCTAAGAGAATCAAACATCCACGAAGACGATACATTTTGGAAAG AGTTGATTCTCGAAAATGCGGAAGCCGAGGAGGTCACAGTTCTCTCAAATGCGACCATGAATGGAAACAGCAGTGCTCCAAGCCACCATACCACAATCGG AAGTGTGGTCTCAGAACTCCTACCAATGCTCGAATCAGCACGATTAGAGGGCGAATTGGCTCGCTGA
AA sequence Show only first row Show all	>Lus10024866 pacid=23178878 polypeptide=Lus10024866 locus=Lus10024866.g ID=Lus10024866.BGIv1.0 annot-version=v1.0 MHHLAAAPPFNPLLPSHGLLFCPNPRLSIVCSPPAAVGHSLRSSFLACRAVDLSPSSPANCSTSLHNNRPNSDSEFRNSNCSKVVDVSTLGNLCVDIVLN VPELPPPPRDDRLAYMERLSASPPDKRYWEAGGNCNVVIAAARLGLRCATIGHVGSEMYGQFLSDVLRDERIRMVGMSEDGDDVVDTSSGAYETLLCWVL VDPLHRHGFCSRADFSEDPAFSWMSKLSGDAKMAIKQSKVLFCNGYGFDDFSPGVIVSALDYAVKVGTSVFFDPGPRGRSLSKGTEEERQALKHLLRMSD VLLLTSDEAESLTGIGNPVLAGQELLRNGVRTKWVIVKMGSKGSILITATSISCAPAFKVDVIDTVGCGDSFVAAVAFGYIRNLPFVNTLAIANAVGAAT ATGCGAGRHVATLERVVDILRESNIHEDDTFWKELILENAEAEEVTVLSNATMNGNSSAPSHHTTIGSVVSELLPMLESARLEGELAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10024866 [exp]	0	1
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	2.2	0.8904
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10043022 [exp]	2.4	0.8887
AT2G20830			transferases;folic acid bindin...		Lus10018557 [exp]	4.8	0.8340
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	5.5	0.8702
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	6.0	0.8678
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	6.9	0.8899
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	8.0	0.8601
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10010025 [exp]	8.1	0.8468
AT5G51150			Mitochondrial import inner mem...		Lus10032508 [exp]	9.5	0.8431
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	9.5	0.8569

Compare expression of checked genes

Lus10024866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.