Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19540 401 / 3e-139 INDH, INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) AT3G24430 188 / 5e-54 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) AT5G50960 140 / 1e-37 ATNBP35, NBP35 nucleotide binding protein 35 (.1) AT5G24020 44 / 0.0002 ARC11, ATMIND1, MIND ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018779 [exp] 577 / 0 AT4G19540 401 / 9e-140 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10043252 [exp] 181 / 2e-51 AT3G24430 817 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10019468 [exp] 161 / 7e-48 AT4G19540 117 / 2e-32 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10019395 [exp] 160 / 1e-43 AT3G24430 745 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10025895 [exp] 150 / 9e-43 AT4G19540 107 / 9e-28 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10011951 [exp] 122 / 6e-33 AT4G19540 111 / 3e-30 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10027463 [exp] 127 / 1e-32 AT5G50960 573 / 0.0 nucleotide binding protein 35 (.1) Lus10039219 [exp] 127 / 1e-32 AT5G50960 566 / 0.0 nucleotide binding protein 35 (.1) Lus10038843 [exp] 43 / 0.0004 AT5G24020 501 / 3e-180 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G042600 [exp] 473 / 1e-167 AT4G19540 422 / 5e-150 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.005G220500 [exp] 472 / 1e-167 AT4G19540 414 / 1e-146 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.018G076600 [exp] 185 / 8e-53 AT3G24430 835 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Potri.001G336900 [exp] 126 / 2e-32 AT5G50960 571 / 0.0 nucleotide binding protein 35 (.1) Potri.004G080100 [exp] 47 / 2e-05 AT5G24020 457 / 9e-163 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF10609 [flax] [poplar] ParA NUBPL iron-transfer P-loop NTPase
Representative CDS sequence Show only first row Show all	>Lus10024867 pacid=23178961 polypeptide=Lus10024867 locus=Lus10024867.g ID=Lus10024867.BGIv1.0 annot-version=v1.0 ATGGGACAAACTTGCCTTGTCCACGGCCGTGGCGACGCACTCGTTGACTCTGTACGCACCGTTTTGCTTCAGCTGGAGTTCGTTTTGGCTCGCAGTTTGG CTCTACACCATCACCGGCTGCTTTGGAGTTCGTCTCTCTTACCACGGACAACTCTCCCACAAGAGCTTCAGGACTCCCAAGTTGCTCGAATATTTGTTTG CTTATTGCGGCGTTCACGCCCTTCAGCATCTGGGCTTCGTGAAAATGGAAGCTTCCTCTTCGTCGAGAGCCATTTCTTCGCCGCAGACGCCCCCGCCGGC TGGGTTACGGAGGCCGAAGATTCCTCTTTATTGATATTTGATTCCCTTGAAGTTACCACGTCTTGGGGCGGGGCGTTTTCACTACTTCAAGGTTTCCCAG TTCGTCTGCCTGCGGGATTTCAAACTCTCACTCATGAAAAGCTTCTTACAAAATTTGAAGGTGCTAGGCTCGGTGGCGTTCGGCAGTATGCTGGGCCGTT TTCCAGATCAAAGCTACGGCTCGAAGGAGTTAAGGACGTCATCGCTGTTGCTTCTGGAAAAGGAGGCGTTGGCAAATCCACCACTGCTGTAAACTTGGCT GTTGCCCTAGCGAACAAGTGCAATTTGAAGGTGGGCTTGCTCGATGCTGATGTCTATGGACCGTCTGTCCCTATGATGATGAAGATCGACCAGAAGCCGG GTATCACCGAAGACAGAAAGATGATACCTATTGAGAATTATGGAGTTAGATGCATGTCAATGGGATTCCTGGTAGAGCAGGATGCTCCCATTGTGTGGAG AGGCCCTATGGTAATGAGTGCTCTTGAGAAAATGACAAGGGGAGTCAGTTGGGGAAATCTCGACATTCTCGTGGTGGATATGCCCCCTGGAACTGGTGAC GCTCAGCTCACCATAACCCAAAGCCTACAGTTATCAGGTGCTGTAATTATTTCAACACCGCAGGATGTTGCATTGCTGGATGCTCGAAGAGGAGTTAAAA TGTTCTCCAAAGTGGAGGTTCCTATTTTAGGGTTCATAGAGAACATGAGTTGCTTCAAGTGTCCACACTGTGATGAACCTTCCTACATTTTCGGTAAAGG GGGAACTCAAAAGATGGCTGATACAATGGGTTACCATTTCATTGGTGAGATACCAATAGAAGTGGATATTAGGACGTGCTGTGATAACGGTACCCCTATC GTGGTCTCATCACCCGATTCTGCTGTCTCGAAAGCCTATGTTGATGCTGCCCGGAGTATCGTGGACAAACTAGAGGATTTGGGAAAGGGAACAACTTTTT CGCCGGAGATTAATCTGTGA
AA sequence Show only first row Show all	>Lus10024867 pacid=23178961 polypeptide=Lus10024867 locus=Lus10024867.g ID=Lus10024867.BGIv1.0 annot-version=v1.0 MGQTCLVHGRGDALVDSVRTVLLQLEFVLARSLALHHHRLLWSSSLLPRTTLPQELQDSQVARIFVCLLRRSRPSASGLRENGSFLFVESHFFAADAPAG WVTEAEDSSLLIFDSLEVTTSWGGAFSLLQGFPVRLPAGFQTLTHEKLLTKFEGARLGGVRQYAGPFSRSKLRLEGVKDVIAVASGKGGVGKSTTAVNLA VALANKCNLKVGLLDADVYGPSVPMMMKIDQKPGITEDRKMIPIENYGVRCMSMGFLVEQDAPIVWRGPMVMSALEKMTRGVSWGNLDILVVDMPPGTGD AQLTITQSLQLSGAVIISTPQDVALLDARRGVKMFSKVEVPILGFIENMSCFKCPHCDEPSYIFGKGGTQKMADTMGYHFIGEIPIEVDIRTCCDNGTPI VVSSPDSAVSKAYVDAARSIVDKLEDLGKGTTFSPEINL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10024867 [exp]	0	1
AT5G27990			Pre-rRNA-processing protein TS...		Lus10002404 [exp]	6.4	0.8005
					Lus10023083 [exp]	11.1	0.7409
					Lus10042562 [exp]	16.9	0.7930
AT5G17070			unknown protein		Lus10008757 [exp]	19.0	0.7806
AT3G19630			Radical SAM superfamily protei...		Lus10020989 [exp]	24.1	0.7691
AT1G01150			Homeodomain-like protein with ...		Lus10042361 [exp]	27.2	0.7553
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10020123 [exp]	28.6	0.7570
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	32.6	0.7825
AT5G10620			methyltransferases (.1)		Lus10026980 [exp]	34.6	0.7768
AT1G60560			SWIM zinc finger family protei...		Lus10025765 [exp]	38.9	0.7539

Compare expression of checked genes

Lus10024867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.