Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01350 489 / 7e-176 QPT quinolinate phoshoribosyltransferase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018780 [exp] 576 / 0 AT2G01350 558 / 0.0 quinolinate phoshoribosyltransferase (.1.2.3.4) Lus10018781 [exp] 576 / 0 AT2G01350 558 / 0.0 quinolinate phoshoribosyltransferase (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G128900 [exp] 509 / 0 AT2G01350 551 / 0.0 quinolinate phoshoribosyltransferase (.1.2.3.4) Potri.010G113500 [exp] 243 / 3e-80 AT2G01350 271 / 3e-91 quinolinate phoshoribosyltransferase (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01729 [flax] [poplar] QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain CL0105 [flax] [poplar] Hybrid PF02749 [flax] [poplar] QRPTase_N Quinolinate phosphoribosyl transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024868 pacid=23178892 polypeptide=Lus10024868 locus=Lus10024868.g ID=Lus10024868.BGIv1.0 annot-version=v1.0 ATGGCGATAAAGCCTCCTTCACATCCTACTTATGATATGACAGCCATAATCAAGCAGGCCCTGGCTGAAGATGCTGGTAACATAGGAGATGTGACTTGCA TGGCAACCATTCCTGAAGATATGCAAGTAGAAGCCCATTTCCTAGCTAAGGAAGATGGTATTGTTGGCGGTGTTGCTCTGGCAGAGATGATATTTGGCGA AGTTGACCCTTCTATAAAGGTGGAATGGTCACGAAGTGATGGAGATTCTGTTCATAAGGGACTGCAGTTTGGAAAAGTATCTGGAACGGCCCACAACATA GTTGTAGCTGAGAGGGTGGTTCTGAACTTTATGCAACGAATGAGCGGGATAGCAACCCTGACCAAGGCAATGGCTGATGCTGCACATCCCGCTTGCATTT TGGAGACTCGGAAAACAGCTCCTGGCTTACGCTTGTTCGACAAGTGGGCGGTTTTAATTGGTGGAGGAAGAAACCACAGGATGGGGCTTTTTGATATGGT CATGATTAAAGATAATCACATATCCATAGCTGGAGGGATCATTAGTGCAATCAAATCCGTAGATCGATACTTGGAGGAAAAGAACCTTCCAATGGAAGTG GAGGTTGAGACAAGGACACTTGAAGAAGTGAACGAGATATTGCAGTACACATCATCTCATACAAAGTCGGCCTTGTCTCGAATAATGTTGGATAATATGG TAGTACCGCTGCCAGATGGAGATATTGATGTATCTATGCTGAAGGATGCTGTAGCATTGATTGACGGGAAATTTGAAACCGAGGCGTCGGGAAATGTTAC TCTCGAGACGGTACACAAAATCGGACAGACTGGTGTAACCTACATTTCCAGCGGGGCTCTTACACATTCTGTGAGAGCACTGGACATCTCCTTGAAAATT GACACCGACTTGGCGCTCAAAGTTGGAAGGCGTACGAAAAGGGCATGA
AA sequence Show only first row Show all	>Lus10024868 pacid=23178892 polypeptide=Lus10024868 locus=Lus10024868.g ID=Lus10024868.BGIv1.0 annot-version=v1.0 MAIKPPSHPTYDMTAIIKQALAEDAGNIGDVTCMATIPEDMQVEAHFLAKEDGIVGGVALAEMIFGEVDPSIKVEWSRSDGDSVHKGLQFGKVSGTAHNI VVAERVVLNFMQRMSGIATLTKAMADAAHPACILETRKTAPGLRLFDKWAVLIGGGRNHRMGLFDMVMIKDNHISIAGGIISAIKSVDRYLEEKNLPMEV EVETRTLEEVNEILQYTSSHTKSALSRIMLDNMVVPLPDGDIDVSMLKDAVALIDGKFETEASGNVTLETVHKIGQTGVTYISSGALTHSVRALDISLKI DTDLALKVGRRTKRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10024868 [exp]	0	1
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	1.4	0.9268
					Lus10032858 [exp]	4.9	0.8804
AT4G37560			Acetamidase/Formamidase family...		Lus10011529 [exp]	7.3	0.8632
AT1G55200			Protein kinase protein with ad...		Lus10041284 [exp]	10.7	0.8353
AT4G05220			Late embryogenesis abundant (L...		Lus10020066 [exp]	12.8	0.8603
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	15.6	0.8929
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	16.7	0.8855
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040311 [exp]	19.1	0.8498
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	21.9	0.8617
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	25.5	0.8785

Compare expression of checked genes

Lus10024868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.