Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30690 188 / 4e-50 Protein of unknown function, DUF593 (.1) AT1G08800 148 / 2e-36 Protein of unknown function, DUF593 (.1.2) AT1G70750 139 / 7e-34 Protein of unknown function, DUF593 (.1) AT1G74830 120 / 2e-28 Protein of unknown function, DUF593 (.1) AT5G16720 118 / 2e-27 Protein of unknown function, DUF593 (.1) AT1G18990 101 / 4e-22 Protein of unknown function, DUF593 (.1) AT4G13630 70 / 4e-12 Protein of unknown function, DUF593 (.1.2) AT5G06560 69 / 7e-12 Protein of unknown function, DUF593 (.1) AT1G04890 68 / 8e-12 Protein of unknown function, DUF593 (.1) AT3G54740 65 / 9e-11 Protein of unknown function, DUF593 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018782 [exp] 1384 / 0 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2) Lus10033854 [exp] 696 / 0 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10014743 [exp] 640 / 0 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1) Lus10006566 [exp] 145 / 8e-36 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10005527 [exp] 144 / 2e-35 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2) Lus10004050 [exp] 110 / 1e-24 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10036656 [exp] 103 / 1e-22 AT1G74830 434 / 1e-146 Protein of unknown function, DUF593 (.1) Lus10033123 [exp] 102 / 2e-22 AT1G74830 430 / 4e-145 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 102 / 6e-22 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220600 [exp] 473 / 4e-155 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 407 / 7e-131 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.019G012200 [exp] 228 / 4e-63 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.013G043400 [exp] 223 / 2e-61 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G007802 [exp] 162 / 1e-41 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.012G073400 [exp] 122 / 1e-28 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 103 / 3e-22 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 96 / 4e-20 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.015G068400 [exp] 94 / 8e-20 AT1G74830 340 / 1e-111 Protein of unknown function, DUF593 (.1) Potri.017G129200 [exp] 89 / 4e-18 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10024869 pacid=23178861 polypeptide=Lus10024869 locus=Lus10024869.g ID=Lus10024869.BGIv1.0 annot-version=v1.0 ATGGCTGCAAAAGGCTCATCTGTTGCTCCACCAAGGAGCACTCTTAGAATTTTCACAGCTGCACTGAGATCAGCAATTTGTGAATGGCTTCTGATTTGCT TCCTACTTCTCGACGGCATCTTCGCCTATCTGCTCACCGAGTTTTCGCGCTACTTCCAACTGCAAGTTCCCTGCATTTTCTGTTCACGCCTCGATCACAT ATTAGGCAATGAGAAACCCGGGTACTATTACCGCAGTCTGATATGCACCAGCCACCAGGCCGAAATATCGTCCTTGATTTTCTGCCAGAGTCACAGCAAG CTCGTTGATGGACGAGCCATGTGCGATGATTGTCTCGTCTCGTTCTCAACCATGCTAGGTCCGAACTCCGACATGCCACGTGCTGTGATAGGTAAACTCG GATATGATCTCGCCTCTAATGGTCCACCAACTTTGTTTACAAACAAGGATCTACTTCCTGGTTCTGTGGCTACCAAGGTATGCTCGTGTTGTCGTAAGCC TTGGAGGTCAAGGCAGCGAGCGGACCGAATCCTGAGGCTGAACTCACCTCGTTTTTCGCGACAAGAGAGCTTGAGGAAGATTAGGGAGAAGTTTTCGGGG TCTTTGACCCCTTGCCGTCTTGGAAATGCTGGATTCTCATCTTTATCATATTCGGAGCTGAAGTTCAATTCCGACTCCGAATCCGAGTTCCTTTACTCTG ATGATGATGAATATCATCTTAACTATAGGCATAACCTAACGAACGAGCAGTCCAAGGAAGATCAACAGGCTAGGACACTTAATGCTGCTGACGAGATTGA GATTCGCCAGCAGTCATTTAAACAACAAGGTATACCTGCAATTCCAGAGATCATTCCACTTGATAATCTTCCACCACGAAACTTGTCGGAGGTTCCTCAT GTGCTGAAAATAGTGATCAAAGAGCAGGACGATCCTTCAGTTCTTGGTGATGACTCTTGCGTGTTATCAGAGCTCGCTGCACTGGTTGATACCCCCTCGG TGTCTGCCGCCTCGATTGAACAGTTCGATGCATCAAATATGGGTTTGGATGGGACTATAACAGATGACGTGAACAACAAGCAACCTGAAGTTCAAGTTGC TCCTGATGTGCCTTCTACATATATAATCCCTTTGCAACAAAATGAAACACCAAGATCCTGCTTCAATGTCCAGGAAAGAGAATCACCTCAACAACATGAG ACGAGTGAGCATGAAGATGATTTGGAGATCAATAATATCGGCTGGGGTTCTGGTGGAATCGAGACGCCACCAGAAGAAGAACCAGTTACAAGAGAGAAAG TTGTTCATCATAACATTGATGCCAGTACCCTAGAGTCCCTCGTTCATGAAATCGAGGGTGAAAGCGTAGATGACAGGCTAAAGAGACAACTAGAGCATGA CCAGATCCTGATAAGTACACTGACAAGGGAACTGGAAGAAGAGAGGAGCGCTTCAGCGATCGCTACAAACGAGGCGATGGCGATGATCACAAGGTTGCAG GCGGAGAAAGCAGCGCTGCATATGGAAGCGTTGCAGTATCTGAGAATGATGGAAGAGCAAGCTGAGTACGATGGGGAGGAGCTTGAGAAGACAAACGATC TCCTGGCCGAAAGGGAGAAGGAGATGCAGGATTTAGAGGCAGAGTTGGATCATTTCAGGTTGAAGTACCCGGAAGAAGAAGAAGAACAAGAAGAAGGAGA TCATCAGCATGCTAGCTCCAGCTATGCAGAACATGATGTCAATGGAAAGAGCAATAATAAAGGCGCAATCTTTACAAAATCTTCGTGGCCTGACATCGAA GAGGAGAAGTCGTTCATTTTCCAGAGGTTGAAGAGTCTGGAAAGGAAGCTAAGGAAAATATCTCAAACTGCAGCATCACCGTACATGTCTGACAGTGAAT ATTCTGAAGAAGCAGCAGCAGAGCGATCAGGAGTTGTGGATGCAGGGGAGTTTTTTGGTAATGAAAGCAGCCATGAAGATTCCAACACATCATCAGGTGG AAAAGATCAGAACTTTGGTGCCAGGAATGGACAAAGATCATCAGCAGCTATTCCTCCAAACCCACAACATCACGAAAGTGGTGAATTGGCGACTGTGAAG AACGAGATCAGCGACTTGAACGAAAGGTTGGAAGCGCTGGAAACTGACTGGAGTTTCCTTGAGCATGCTTTCAAGTCGCTTGAAGGTGGGAAAGAAGGGC TGCAGTTTGTTCAGGAAATAGCTCACCATCTGCAGGAGTTGCGCAAGATCGGGTTGCGGTGTAGTAGATGCCAGCCTGTTCCTTAG
AA sequence Show only first row Show all	>Lus10024869 pacid=23178861 polypeptide=Lus10024869 locus=Lus10024869.g ID=Lus10024869.BGIv1.0 annot-version=v1.0 MAAKGSSVAPPRSTLRIFTAALRSAICEWLLICFLLLDGIFAYLLTEFSRYFQLQVPCIFCSRLDHILGNEKPGYYYRSLICTSHQAEISSLIFCQSHSK LVDGRAMCDDCLVSFSTMLGPNSDMPRAVIGKLGYDLASNGPPTLFTNKDLLPGSVATKVCSCCRKPWRSRQRADRILRLNSPRFSRQESLRKIREKFSG SLTPCRLGNAGFSSLSYSELKFNSDSESEFLYSDDDEYHLNYRHNLTNEQSKEDQQARTLNAADEIEIRQQSFKQQGIPAIPEIIPLDNLPPRNLSEVPH VLKIVIKEQDDPSVLGDDSCVLSELAALVDTPSVSAASIEQFDASNMGLDGTITDDVNNKQPEVQVAPDVPSTYIIPLQQNETPRSCFNVQERESPQQHE TSEHEDDLEINNIGWGSGGIETPPEEEPVTREKVVHHNIDASTLESLVHEIEGESVDDRLKRQLEHDQILISTLTRELEEERSASAIATNEAMAMITRLQ AEKAALHMEALQYLRMMEEQAEYDGEELEKTNDLLAEREKEMQDLEAELDHFRLKYPEEEEEQEEGDHQHASSSYAEHDVNGKSNNKGAIFTKSSWPDIE EEKSFIFQRLKSLERKLRKISQTAASPYMSDSEYSEEAAAERSGVVDAGEFFGNESSHEDSNTSSGGKDQNFGARNGQRSSAAIPPNPQHHESGELATVK NEISDLNERLEALETDWSFLEHAFKSLEGGKEGLQFVQEIAHHLQELRKIGLRCSRCQPVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08800			Protein of unknown function, D...		Lus10024869 [exp]	0	1
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	3.9	0.8033
AT5G56450		PM-ANT	Mitochondrial substrate carrie...		Lus10013518 [exp]	4.7	0.7371
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10033504 [exp]	5.7	0.7611
AT2G32070			Polynucleotidyl transferase, r...		Lus10036291 [exp]	6.9	0.7527
AT1G08800			Protein of unknown function, D...		Lus10018782 [exp]	7.1	0.7914
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	9.0	0.7412
AT3G52240			unknown protein		Lus10043425 [exp]	12.4	0.7313
AT5G18200			UTP:galactose-1-phosphate urid...		Lus10016535 [exp]	12.6	0.6698
AT5G07610			F-box family protein (.1)		Lus10014320 [exp]	13.3	0.6874
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10038221 [exp]	16.2	0.7448

Compare expression of checked genes

Lus10024869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.