Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16430 433 / 4e-149 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 193 / 3e-55 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G01260 161 / 2e-43 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G32640 141 / 3e-36 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 139 / 2e-35 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 137 / 9e-35 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46830 133 / 8e-34 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT4G00870 125 / 2e-31 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00480 85 / 2e-17 bHLH ATMYC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G09820 75 / 3e-14 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018787 [exp] 793 / 0 AT4G16430 447 / 8e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030243 [exp] 184 / 1e-51 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10005966 [exp] 178 / 1e-49 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10000037 [exp] 138 / 5e-38 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 137 / 2e-35 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 139 / 4e-35 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 137 / 4e-35 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 136 / 2e-34 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 135 / 8e-34 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G042000 [exp] 553 / 0 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G221100 [exp] 548 / 0 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G099700 [exp] 194 / 3e-55 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G176900 [exp] 174 / 1e-48 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 170 / 2e-47 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 161 / 2e-43 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.003G147300 [exp] 152 / 8e-41 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 151 / 1e-40 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G092200 [exp] 138 / 6e-35 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G142200 [exp] 136 / 2e-34 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024871 pacid=23178883 polypeptide=Lus10024871 locus=Lus10024871.g ID=Lus10024871.BGIv1.0 annot-version=v1.0 ATGGGGGAGAATTTCTGGTCTAGCAGCGATGAGAAAGCTATGGCGGAGTCTATACTAGGTAGCGAGGCCTGTGAGTTCTTGATTTCGTCGAATTCGAAAC TTCGTTCCACGGAATTGGTCAGCTCACCAAGCAATCTGGGCTTGCAGCAGGGTTTGCACCAGCTTGTGGAAGGTACTGAGTGGAACTATGTCATACTCTG GCATGCCTCCGGAACGAAATCCACAGTTGATCTCTTGACTTGGGGCGATGGGATTTGTCGCGATCCGAAAGATGCCGGAGGAAAATTGGAAGGAGGAGGG GAGAAGAGGGAGGAGGCCAAGAAGCTCGTGCTTCAGAAGCTGCGTTCTCTCAGTACTACTCATGTAGCAGTTAGCTTGGATGGGGTTTCGGATGTCGAAA TGTTCTATCTTGTGTCGATGTATTTCCGATTCTGGTCCGATTCGGCCACAGGTGATGGTGCGATGGAGTCATACAAGTCTGGTAGATTGATTTGGGCGTC CGATAGGGCGAATTGTTTGGATCAGTATCAGCTGAGGTCGGTTCTTGCTGAAGCTGCTGGTTTCCAGACTGTTGTGTTCGTACCGGTTAAGTCCGGTGTG TTAGAGCTTGGTTCAGTCAAGCAGATTCATGAAGAGTCTAGTCTTGTTAAGAGTGCTGCAACCATCTTTGGAGAGAGTAATCAAACCAAGGTTTGTCCGA AGATATTCGGTCACGAGTTAAGCCTAGGCAGCTCGAAACCAAGGTCGATGAGCATCAGCTTTTCTCCGAAAGTTGAGAACGAGCTGGTTTTCAATTCGGA TTCCTATACAATACAGGAGCTGAGTACTGGTCAAGTTTATGGAAGTAGTTCTAACAACGGCTGCTCTGGTTCTGGGACTGCTGAATTGGCTATAGGAGAC GAGCGGAAACCGAGGAAGAGGGGAAGGAAGCCTGCTAATGGACGAGAAGAGCCGCTGAACCATGTAGAAGCGGAGAGGCAGAGGAGGGAGAAGCTGAACC AGAAATTCTATGCATTGAGGGCTATTGTTCCGAACATTTCGAAAATGGACAAGGCCTCTCTACTTGGCGATGCAATCACTTATATCAACGATCTCCAGGC GAAGATTAAGGTCATGGAGACCGAGTCAGGAGGCAACAACAAGCACGTTATGATGCCGGAGATTGATTTCCACCCTAGGCAGGACGATGCGATTGTGACC GTGAGTTCCCCTTTGGTGGACCACCCGGTTGGCAGCATCATTGAGAAGTTCAGGGAGCACCAAGTGACGGCACACGAGTGCAATGTTTCGTCGACCGAGG AAGGTAAGATTGTTCATACGTTCTCGATCCGGACCCAGAGCGGTGCTGCTGAGCAGTTGAAGCAGAAACTCGTAGCTGCCCTCGTTCCGGAATGA
AA sequence Show only first row Show all	>Lus10024871 pacid=23178883 polypeptide=Lus10024871 locus=Lus10024871.g ID=Lus10024871.BGIv1.0 annot-version=v1.0 MGENFWSSSDEKAMAESILGSEACEFLISSNSKLRSTELVSSPSNLGLQQGLHQLVEGTEWNYVILWHASGTKSTVDLLTWGDGICRDPKDAGGKLEGGG EKREEAKKLVLQKLRSLSTTHVAVSLDGVSDVEMFYLVSMYFRFWSDSATGDGAMESYKSGRLIWASDRANCLDQYQLRSVLAEAAGFQTVVFVPVKSGV LELGSVKQIHEESSLVKSAATIFGESNQTKVCPKIFGHELSLGSSKPRSMSISFSPKVENELVFNSDSYTIQELSTGQVYGSSSNNGCSGSGTAELAIGD ERKPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAIVPNISKMDKASLLGDAITYINDLQAKIKVMETESGGNNKHVMMPEIDFHPRQDDAIVT VSSPLVDHPVGSIIEKFREHQVTAHECNVSSTEEGKIVHTFSIRTQSGAAEQLKQKLVAALVPE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Lus10024871 [exp]	0	1
AT2G42005			Transmembrane amino acid trans...		Lus10022995 [exp]	6.4	0.8210
AT3G26020			Protein phosphatase 2A regulat...		Lus10031536 [exp]	6.5	0.7439
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10000046 [exp]	10.9	0.7744
AT2G42005			Transmembrane amino acid trans...		Lus10001390 [exp]	12.1	0.8101
AT3G02720			Class I glutamine amidotransfe...		Lus10010964 [exp]	13.3	0.7812
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10019967 [exp]	14.8	0.7787
AT1G70780			unknown protein		Lus10034416 [exp]	18.5	0.7730
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10037491 [exp]	19.9	0.7465
AT5G19860			Protein of unknown function, D...		Lus10013752 [exp]	21.1	0.7753
AT1G03350			BSD domain-containing protein ...		Lus10029636 [exp]	24.9	0.7865

Compare expression of checked genes

Lus10024871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.