Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03030 298 / 2e-98 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G59940 50 / 1e-06 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74510 48 / 7e-06 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G27420 46 / 2e-05 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 45 / 4e-05 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 45 / 7e-05 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 44 / 8e-05 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 43 / 0.0002 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G27150 43 / 0.0003 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 42 / 0.0004 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000704 [exp] 311 / 9e-102 AT4G03030 391 / 4e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013538 [exp] 62 / 2e-10 AT1G15670 192 / 7e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017300 [exp] 58 / 3e-09 AT1G15670 203 / 9e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10029329 [exp] 57 / 8e-09 AT1G15670 195 / 3e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 56 / 1e-08 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10016214 [exp] 54 / 7e-08 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 54 / 8e-08 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G221300 [exp] 348 / 3e-118 AT4G03030 496 / 9e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G041900 [exp] 236 / 4e-75 AT4G03030 400 / 7e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 57 / 9e-09 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.003G218400 [exp] 55 / 3e-08 AT2G44130 185 / 4e-55 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G196900 [exp] 51 / 6e-07 AT1G15670 211 / 7e-66 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 50 / 1e-06 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.001G007000 [exp] 49 / 3e-06 AT1G15670 198 / 1e-60 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G176000 [exp] 48 / 6e-06 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G193800 [exp] 47 / 1e-05 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G063200 [exp] 46 / 2e-05 AT1G74510 529 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10024874 pacid=23178897 polypeptide=Lus10024874 locus=Lus10024874.g ID=Lus10024874.BGIv1.0 annot-version=v1.0 ATGACTCGGTTCCGGTCAACACCACCGGCGTCCACGATCCCGCCGATCCAATCCGCTGGATCACTAATTCCCGGGCTTCCGAACGACGTGGCAGCTCAGA TACTCTCCATGCTCCCTTACTCTCACCATTCCCGCGTCAAGCCGACCTGCAAATCCTGGCACCTCTTCCTCTCTTCGAAAAACCTAATTTACCTCCGCCG CCACCTCCGTCACGCGAGTCACCTCCTCTGCATCTTCCCTGAGGATCCTTCGATCTCCTCCCCTTATCTATTCGATCCACTCCCTAGGGGCTCATTCGCT TGCGTTGCGATCCCTAGCTTGGGGCAGATCGTTGTTGCTGGTGGAGGGTCGAGGCACGCGTTTTTCGGCGCGGCTGGGAGCAGGATGAGTTCTGTGGAGA GGTATGATGTTGCGAGGGATGAGTGGGTGGCTCTGGATGGTTTGCCTAGGTATAGGGCTGGCTGCTCGGGGTTTTTGGCCGGTGGTGATCATGGTGAGGA GATGAATTTCTGGGTGATGGGAGGGTATGGTGAGTCGAGGACGATTTCAGGTGTGTTCCCTGTGGATGACTATTATAAGGATGCGGTGGTGATGGAGGTG AATAAGTACGGGACTGAGAAGTGGAAAGAGGTTGGGGATATGTGGCAGCAAGGGGAAAGAGCGAGGCTTGGCAAGGTTGTAGCCATTGAAGAGGATGACA ATGGTTCTTCTTCTCCTGCTGTTTTCATGCTTGATGGTCATGATATTTTCAGGTATGACATGACTTTCAACCGTTGGCAAAAAGAAGCCAGCGTACCAAG AAAAGCACCTCAGGAATCTTCGTATGGGTTCGTAGCGTTGTACGGTGAGCTACATGTAATGACTGCCATCAAATGCTCCGATTTATCACGAACGACAAGA CAGCAAAAGAGGGCAGGATTCCTTTTCGTCCAAATCTACAGCCCGAGGAAGAAGACTTGGAGGTCATTGCTCTCAAAGCCGCCATTCCAGTCCGCACTGG AGTTCAACACTGCTGTTATGTGCTCAATTCAAATTTAG
AA sequence Show only first row Show all	>Lus10024874 pacid=23178897 polypeptide=Lus10024874 locus=Lus10024874.g ID=Lus10024874.BGIv1.0 annot-version=v1.0 MTRFRSTPPASTIPPIQSAGSLIPGLPNDVAAQILSMLPYSHHSRVKPTCKSWHLFLSSKNLIYLRRHLRHASHLLCIFPEDPSISSPYLFDPLPRGSFA CVAIPSLGQIVVAGGGSRHAFFGAAGSRMSSVERYDVARDEWVALDGLPRYRAGCSGFLAGGDHGEEMNFWVMGGYGESRTISGVFPVDDYYKDAVVMEV NKYGTEKWKEVGDMWQQGERARLGKVVAIEEDDNGSSSPAVFMLDGHDIFRYDMTFNRWQKEASVPRKAPQESSYGFVALYGELHVMTAIKCSDLSRTTR QQKRAGFLFVQIYSPRKKTWRSLLSKPPFQSALEFNTAVMCSIQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	0	1
AT5G40470			RNI-like superfamily protein (...		Lus10002515 [exp]	1.0	0.9028
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10006771 [exp]	1.4	0.8913
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10041348 [exp]	3.5	0.8691
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10013592 [exp]	4.0	0.8548
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10037370 [exp]	4.9	0.8496
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	5.1	0.8494
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	5.5	0.8752
AT2G20920			Protein of unknown function (D...		Lus10025079 [exp]	5.5	0.8508
AT3G63220			Galactose oxidase/kelch repeat...		Lus10042607 [exp]	6.7	0.8635
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	8.0	0.8468

Compare expression of checked genes

Lus10024874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.