Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12770 846 / 0 MEF22 mitochondrial editing factor 22 (.1) AT4G30700 517 / 5e-172 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 506 / 2e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 504 / 1e-167 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 496 / 8e-164 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 492 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 483 / 4e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 486 / 9e-160 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 472 / 5e-155 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 466 / 4e-151 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000706 [exp] 1566 / 0 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10029436 [exp] 511 / 4e-171 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035815 [exp] 507 / 4e-168 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 506 / 3e-167 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031989 [exp] 481 / 4e-159 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 484 / 7e-159 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 474 / 1e-156 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 471 / 6e-155 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 469 / 1e-154 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152000 [exp] 986 / 0 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.006G181800 [exp] 526 / 1e-175 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 513 / 2e-170 AT3G22690 582 / 0.0 unknown protein Potri.018G071800 [exp] 511 / 2e-170 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 509 / 3e-170 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 508 / 6e-169 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 505 / 7e-169 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 504 / 1e-168 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 500 / 8e-167 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 502 / 7e-166 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0020 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10024876 pacid=23178827 polypeptide=Lus10024876 locus=Lus10024876.g ID=Lus10024876.BGIv1.0 annot-version=v1.0 ATGTCTCTAAGCCTTTCCTCTACAAGATTTGTCTCTCTTGTCCGACTTCCTGCAAATTGGCAATCTTTTCTTGTCGGGCTCTTTGAATTACCCGCCTCAC TTGTTGGATTCGATAGAAAAAAGTCCTCGCTTTCTCTCGGTATAGATAAAGGAAACCAGGAACGCTTTCATGCTTTTGTTTCTGATGCCGGTTACGCTCA TCTCATTGAGAATGCAGCTAACAGAAACCATTTAAATCAGGTACAGACTCAATTGATGGTCTTCGGGTTACAGTGTCATGGGTTCTTGGTTGCCAAATTT GTTAATGCGTGTACACGTCTTGGAGAAATGAATTATGCACGTGAAATTTTTGATGGTTTTCCTGGCCCGGATGTGTTTCTGTGGAATTCGATTATAAGGT GTTATTCGAGGCATAATTTGTTCCGTGATGCCGTTAGCATGTATGGTAGGATGCAATTGGTATGGGCTAATCCTGACAGCTTTACCTTCACCTGTGTTCT TAAGGCTTGTAGTGGTTTGCCAGCACTTGAAATGGGTCGGCGGATACAGGGCCAGATATTTAGGCGTGGGTTTGATTCTGACGTCTTTGTGCAGAATGGT CTTGTTACATTTTATGCAAAATGCGGGGAGATTGAGCTGGCTAACAAGGTTTTTGGGAGGTTGTCTGAAAAGACAATTGTCACTTGGACTTCGATGATTT CTGGGTATGCACAGAATGGGAAGCCCCTTGAAGCTCTTAGAGTTTATGGCCAAATGAGGAATACTAATTTGAAACCTGAGTGGATAACGTTTGTTAGTGT TCTTAAGGCATACACCGATATAGAAGGATTGGAAGGAGGGAAATGTATTCATGGTTGTGCTATTAAAATGGGATTTGAGTTGGAACCTGATTTAGTTGTT GCACTCACTGCATTATATGCAAAATGCGGGCAGGTAATTGTTGCAAAAATTTTCTTTGATCGGGTGGAATATCCAAACTTAGTATTGTGGAATGCAATGA TTTCTGGTTATGCAAAGAATGGCCATGCAGAAGAAGCTGTTGAATTATTCTGTAGGATGGTGAATAAGAAAGTTGGGTCTGATTCAATATCTGTAACCTC TAGTATCTCTGCTTGCGGCCAAGTGGGTTCTATTGAGTTAGCAAGATGGATGGACGAATATGTAGCAAACAGTGAGTTTAAAGCTGACATTGTTGTTAAT ACATCACTTATTGATATGTATGCAAAATGTGGAAGTGTCAACTCTTCTCGCAATGTTTTCAATAGAACAGGAGAGAAGGATGTAGTCATGTGGAGTGCGA TGATAGCTGCATATGCCTTGCATGGCCAAGGTCAAGAAGCAATTGATCTCTTCACTGCGATGAGACACTCTGGGGTGCAGCCTAATGATGTCACCTTTGT CAGTCTCCTTTCAGCATGCAACCATTCAGGTCTTGTAGAAGAAGGATGGAAACTTTTCCACTGTATGAGAGAATATGGAATAGAACCACGCCACCAGCAT TATGCTTGTGTGGTTGATCTTCTGGGACGGGCAGGCCATCTAGACAGAGCTTATGATTTTATTAGGAATATGCCAATTGAGCCAGGTGTTAGTGTGTGGG GAGCTCTTCTGACCGCATGCAAGATCCATCGACATGTCACTCTGGGAGAGTATGCTGCTGAACGTCTTTTCTCACTAGACCAGTACAGTACAGGGCATCA CGTTCAGTTGTCTAACATCTATGCTTCAGCTCGTATGTGGGATCATGTCTCAAAGATGCGAGTTCTGATGAAGGAGAAAGGCATGAGTAAAGACCTTGGA TATAGTTCAATAGAAATTAATGGAAAACCTCAAGTATTTCAAGTGGGAGATAAGTCTCATCCAAGATTCACAGAGATACTTGAAAAACTTGTGAGTTTAG AGAGGAAATTGAAGGAGCTTGGATTTTTCACTGATACAGAATCTGTCCTTCATGATTTGAATGACGAAGAAATAGAAGAGACTCTTTGTAATCATAGTGA AAGGATAGCAATTGCTTATGGGCTAATAAGTACTCGCCCTGGAACGACTCTTAGGATATTAAAGAATCTCCGGGCATGTGTAAACTGCCATGTAGCAATC AAGCTTATATCAAAGATTGAAAATCGAGAAATTATTGTCAGGGATTCAAATCGTTTTCATCACTTCAAGGATGGAAAATGTTCTTGTGGGGATTATTGGG ATATAAGGAACAACAGGACTGCTCTCTTCGATGGCATAGAGGAGGGTGGCATCAGGGCGTCTTCTTCTTACTCCCATGAAATTAACGAGCAAGCTAATGA AAGTGCCCTGGAAGGTTTACAAGACAGAGTTAATCTGCTGAAGCGGCTGTCGGGTGATATACATGAAGAGGTGGAGGGGCATAATCGCATGCTGGATGGA ATGGGCAATGATATGGATTCATCAAGAGGAGTCCTTTCAGGAACAATGGATCGTTTCAAAATGGTATTCGAGACGAAATCAAGCCGGAGAATGTTTACGC TGGTGGCATCATTTGTGGTGGTATTCCTAATCATATACTATCTGACTCGGTGA
AA sequence Show only first row Show all	>Lus10024876 pacid=23178827 polypeptide=Lus10024876 locus=Lus10024876.g ID=Lus10024876.BGIv1.0 annot-version=v1.0 MSLSLSSTRFVSLVRLPANWQSFLVGLFELPASLVGFDRKKSSLSLGIDKGNQERFHAFVSDAGYAHLIENAANRNHLNQVQTQLMVFGLQCHGFLVAKF VNACTRLGEMNYAREIFDGFPGPDVFLWNSIIRCYSRHNLFRDAVSMYGRMQLVWANPDSFTFTCVLKACSGLPALEMGRRIQGQIFRRGFDSDVFVQNG LVTFYAKCGEIELANKVFGRLSEKTIVTWTSMISGYAQNGKPLEALRVYGQMRNTNLKPEWITFVSVLKAYTDIEGLEGGKCIHGCAIKMGFELEPDLVV ALTALYAKCGQVIVAKIFFDRVEYPNLVLWNAMISGYAKNGHAEEAVELFCRMVNKKVGSDSISVTSSISACGQVGSIELARWMDEYVANSEFKADIVVN TSLIDMYAKCGSVNSSRNVFNRTGEKDVVMWSAMIAAYALHGQGQEAIDLFTAMRHSGVQPNDVTFVSLLSACNHSGLVEEGWKLFHCMREYGIEPRHQH YACVVDLLGRAGHLDRAYDFIRNMPIEPGVSVWGALLTACKIHRHVTLGEYAAERLFSLDQYSTGHHVQLSNIYASARMWDHVSKMRVLMKEKGMSKDLG YSSIEINGKPQVFQVGDKSHPRFTEILEKLVSLERKLKELGFFTDTESVLHDLNDEEIEETLCNHSERIAIAYGLISTRPGTTLRILKNLRACVNCHVAI KLISKIENREIIVRDSNRFHHFKDGKCSCGDYWDIRNNRTALFDGIEEGGIRASSSYSHEINEQANESALEGLQDRVNLLKRLSGDIHEEVEGHNRMLDG MGNDMDSSRGVLSGTMDRFKMVFETKSSRRMFTLVASFVVVFLIIYYLTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10024876 [exp]	0	1
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10014186 [exp]	2.8	0.8691
AT1G12390			Cornichon family protein (.1)		Lus10015866 [exp]	3.5	0.8346
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10013021 [exp]	3.9	0.7982
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10041379 [exp]	6.5	0.8277
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10025201 [exp]	7.1	0.8334
AT4G35980			unknown protein		Lus10041889 [exp]	8.1	0.8370
AT3G05000			Transport protein particle (TR...		Lus10033832 [exp]	8.9	0.8258
AT5G27830			unknown protein		Lus10020660 [exp]	11.2	0.8374
AT4G30240			Syntaxin/t-SNARE family protei...		Lus10017038 [exp]	20.0	0.7697
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032606 [exp]	22.8	0.7830

Compare expression of checked genes

Lus10024876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.