Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42450 619 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT4G16070 114 / 2e-26 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT3G14075 102 / 7e-23 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT1G05790 80 / 1e-15 lipase class 3 family protein (.1.2) AT4G00500 75 / 3e-14 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G49050 64 / 1e-10 alpha/beta-Hydrolases superfamily protein (.1) AT5G37710 63 / 2e-10 alpha/beta-Hydrolases superfamily protein (.1) AT3G14360 42 / 0.0008 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000708 [exp] 1043 / 0 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10015680 [exp] 119 / 3e-28 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10013158 [exp] 114 / 2e-26 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10008121 [exp] 113 / 3e-26 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10037710 [exp] 106 / 6e-24 AT4G16070 764 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10016834 [exp] 105 / 2e-23 AT4G16070 750 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10030391 [exp] 79 / 1e-15 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 77 / 6e-15 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10019566 [exp] 75 / 1e-14 AT1G05790 263 / 3e-84 lipase class 3 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222000 [exp] 705 / 0 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G041000 [exp] 131 / 2e-35 AT2G42450 139 / 5e-39 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G067900 [exp] 109 / 7e-25 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.008G211200 [exp] 107 / 2e-24 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 102 / 1e-22 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.014G150800 [exp] 77 / 1e-14 AT1G05790 622 / 0.0 lipase class 3 family protein (.1.2) Potri.002G159200 [exp] 72 / 3e-13 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G086900 [exp] 71 / 5e-13 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G083600 [exp] 69 / 4e-12 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G130000 [exp] 68 / 7e-12 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10024878 pacid=23178912 polypeptide=Lus10024878 locus=Lus10024878.g ID=Lus10024878.BGIv1.0 annot-version=v1.0 ATGGCAAATCGACTATTGAAGCGGTTTTTTCACAACAATGAATACACCAAGTACTTTGCGGCGAGGCAAGAAGCCTACCGGCAGCTAGCCGACCACGTTC TGCGGCGGTGGCAATCGCGAACTCCCGGAGACACTTACCTGGAATCAACGGGGAAGTTGGATTCCAAGCGCAATAGCGGGGATGAGGATGATAGCTCCAA TAAATGGAATTTGGAGCCGGTTTGGCTCGCGAAAACGCTCGAACCAGCGTTGCAGCTCTGCAGGTGGGCGCTCCCTGGAGGGAGTGGAACTGGAAACAAA ATTCCTCCAAGTGGCCGATCTATTTCGGAAGTCATTACCAGCATCCAGAAGAGTAAGATTGGGATTGAGGATTGGACCTTGAGTGATTTCACAATTGGCT TGTATCTTCTTTATCTTCGTCAGGGTTCTGTGAATGCGTTGGAGGATGTTAAGGGGATTCAAGTCTCATCTGAAGCAATAATTGAAGATCTGATTTATCA CCTCGAGTTAGCTAAAGGCTGCTACAAGGGTGATGTTGCTGGTCTTGTAAGGCACAGCATGCTCCGCGAGAGAAACATTCTCAAATACGTGAAAGATTCT AGCGTGATGAGGCCTGGATATTACATTGGCATTGATCCGCGGAAGAAGCTTGTGATTCTGGGAATTCGCGGTACTCATACAGTCTATGACCTCATCACCG ACATTGTTTCGTCGAGTGACGATGAAGTCACATTTGAAGGTTACTCGACTCATTTTGGCACTGCTGAAGCTGCTCGTTGGTTTCATAAACATGAGATGCA AACAATAAAGAAGTGCTTGGAGGAGAATGAGGGATATAGGTTCAGGGTGGTGGGCCATTCTCTTGGAGGCGCCATTGCTTCTTTGCTGGCGATCATGCTC CGCAGATGTTCACACAAAGAACTTGGGTTTTCCCCCGAGCTTGTTTCTGCTGTTGGATATGCTACACCTCCTTGTGTCTCCAGTGAACTTGCTGAAAGTT GTTCAGATTTTGTTATGAATGTTGTTATGCAGGATGATGTCGTGCCTAGATTAAGTGCAGCTTCTTTGGCACGAATGCGAAATGAAATTCTTCAAACTGA TTGGACCAGTGTAATTGAGAAAGAAGACTGGAAAAGCGTTATAGGGTTGGTCACCAATGCAAAGCAAGTTGTTTCTTCAGTTCAGGATGTAGCCGGGAAG CTGGGCGACTTTGCGAAGTTGTGGGGGAAAAGTTCTCCAGATTCTCCAAAGAGGAAAACGCCTCGTGTTCCTTCGACATCAAAACCTTCAAGAGAGGATG ATGCCAGCAAGCAAAAGGAAGGGCACTCAACATCAAAGCCATCAAGAGAGAACGGTTATAGCAAGGACGAAAAGGAAGGGAACGCAAATAGCGTGCCAGC AGAGTTGTTTGTTCCAGGGTCCGTGTACTATCTCAAGCGAAACATCGAAAACAGAAGCAGCCACAGCGGCGATAGGGGGCTGGAGTATTTCACACTGTTG AAGAGGCGGCCAAGCGAACACTTCCAGAAGATAGTTCTTTCCAACAACATCATCTCGGATCACAAATGCGACAGCCATCAGTATGCTCTCCGGGATGTAC TCAAGGGCCTGTCTGATGCTCGAGATGAAGTCCTTTTCCGGCAATGA
AA sequence Show only first row Show all	>Lus10024878 pacid=23178912 polypeptide=Lus10024878 locus=Lus10024878.g ID=Lus10024878.BGIv1.0 annot-version=v1.0 MANRLLKRFFHNNEYTKYFAARQEAYRQLADHVLRRWQSRTPGDTYLESTGKLDSKRNSGDEDDSSNKWNLEPVWLAKTLEPALQLCRWALPGGSGTGNK IPPSGRSISEVITSIQKSKIGIEDWTLSDFTIGLYLLYLRQGSVNALEDVKGIQVSSEAIIEDLIYHLELAKGCYKGDVAGLVRHSMLRERNILKYVKDS SVMRPGYYIGIDPRKKLVILGIRGTHTVYDLITDIVSSSDDEVTFEGYSTHFGTAEAARWFHKHEMQTIKKCLEENEGYRFRVVGHSLGGAIASLLAIML RRCSHKELGFSPELVSAVGYATPPCVSSELAESCSDFVMNVVMQDDVVPRLSAASLARMRNEILQTDWTSVIEKEDWKSVIGLVTNAKQVVSSVQDVAGK LGDFAKLWGKSSPDSPKRKTPRVPSTSKPSREDDASKQKEGHSTSKPSRENGYSKDEKEGNANSVPAELFVPGSVYYLKRNIENRSSHSGDRGLEYFTLL KRRPSEHFQKIVLSNNIISDHKCDSHQYALRDVLKGLSDARDEVLFRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42450			alpha/beta-Hydrolases superfam...		Lus10024878 [exp]	0	1
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10011363 [exp]	9.8	0.6912
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10013562 [exp]	27.3	0.7105
					Lus10010599 [exp]	28.5	0.6638
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10014475 [exp]	31.9	0.7092
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001949 [exp]	34.9	0.7083
AT4G30010			unknown protein		Lus10001623 [exp]	45.3	0.6348
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10029359 [exp]	46.6	0.6829
					Lus10022956 [exp]	55.1	0.6575
AT1G71230		CSN5B, AJH2	COP9-signalosome 5B (.1)		Lus10026947 [exp]	59.6	0.6967
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005459 [exp]	79.7	0.6763

Compare expression of checked genes

Lus10024878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.