Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31270 231 / 1e-69 ATCDT1A, CDT1A, CDT1 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) AT3G54710 157 / 9e-43 ATCDT1B, CDT1B, CDT1 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000708 [exp] 711 / 0 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10040505 [exp] 138 / 2e-35 AT3G54710 171 / 5e-47 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1) Lus10011306 [exp] 91 / 3e-19 AT3G54710 110 / 2e-25 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222700 [exp] 305 / 8e-98 AT2G31270 357 / 3e-116 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) Potri.002G040100 [exp] 303 / 4e-97 AT2G31270 339 / 1e-109 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) Potri.004G067700 [exp] 123 / 4e-30 AT2G31270 115 / 8e-27 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF08839 [flax] [poplar] CDT1 DNA replication factor CDT1 like
Representative CDS sequence Show only first row Show all	>Lus10024879 pacid=23178974 polypeptide=Lus10024879 locus=Lus10024879.g ID=Lus10024879.BGIv1.0 annot-version=v1.0 ATGCCGCACCAGCCTAATAAGAGCGCCGCCAAATCTACCCGCCGGAGAAAACTTTCCTGGCCAGATGCACCGTCTCCGTCCGTCTCGAAACAAGGAGGAT CCGTTGGCGACGGAACTATCAATAAGCTTCCTGAAAAGTATGAGATGCTGATTGAGTTCTTCAATTGCTTGGATAATTCGATTCGCCTGCTGAAGATGAA AGGCTCTTCCTCTACCTTCCCCAATATTTTCCGTATAATTGAATCCCTAACCACAAGGAGATTCTCTCATGGAAACTTGGCGCAATTGAAGTATATACTG CCGGAGGCAATCGAGATAAAGAAGGTGATGAAGTTCGACGAAAGAACTTGCTGTATGAAGCCTGATCTACATGTTTCAGTCAACGCTGATGCTATTGAGT TTGACGATGAATCGAAATCCCCAGAGGGAAAGCACTCGAGTTTGAGGAATGTGTTCCGCAAACGCTTGGAGAAATTCTTTGAATCCCACCCTGAGGGTGA TGAAGTTCCTGAAGAGATGCTGCCTGAGCCATTCAATTATGTTAAATCTGATAAGGTGTTAGAAAAGCCTCCAGCAGTCAATGGAGACTCTTCACCCGGC ACTCCATTTGCCACCGAGAGCGAAGCACTTGAGACGCTCCAGCCAGTTGCAGCTTCTCATCATTCAAGCTCTTTCAGGAGGTCCTTCTCCACGAAGAGGA AATTGGAAGGGAAGTTATTAGAGGATAATCCATCTTCCCCTCAGCCTGTGTTGCCAGTCTCCGAGCCTTCATTGGCCTCCGATAGAGAAACCGTTTCACC GGCTATTGCCATTGCTACCGCTCCTTGCATACCTCAATCTCCTGCTAAGAAGATGGAGGTTGACAGTAGTTCACTGCAGTCAACTCCAGCGAGAGTTGTG TTGACTCCAACTAAGTTAATGTCAGTTACACCTGCACAATGCAAGCAAAAGAGAAGCTCGACTACTTTGACTCCTGATGGTGGTTCTAACAGTTTGCCAA ACAAGCTGGTGAGGCGACTACCAGTTCACGATGACGATGATGATCTTCCCGAGAGTCTTCTCGAATCGATAAGGGAGAAACAGAGAAAGGCTGATGAGGA GAAGGATCCAGCTATCTCGCAAGCAAAGAGGCGGCGAAAGATGATTGCCAGTTCGCCTAAGCTATTCGACACTATCCGTTTCTTGTTTCAGTCAATAAAC CGATCGGTTATCACCAAGGAGGAACTGATTCATAAGATTGTTGCTGGTCAATTGGGTATTGCTGACAGAAGGGAAATAGAAGAACGACTGAACTTGCTAG AGGAGTTACTTCCAGAATGGATCTCTGAGAAGAAAGCACTGAGTGGCGATTTGCTCTGCTGGTAA
AA sequence Show only first row Show all	>Lus10024879 pacid=23178974 polypeptide=Lus10024879 locus=Lus10024879.g ID=Lus10024879.BGIv1.0 annot-version=v1.0 MPHQPNKSAAKSTRRRKLSWPDAPSPSVSKQGGSVGDGTINKLPEKYEMLIEFFNCLDNSIRLLKMKGSSSTFPNIFRIIESLTTRRFSHGNLAQLKYIL PEAIEIKKVMKFDERTCCMKPDLHVSVNADAIEFDDESKSPEGKHSSLRNVFRKRLEKFFESHPEGDEVPEEMLPEPFNYVKSDKVLEKPPAVNGDSSPG TPFATESEALETLQPVAASHHSSSFRRSFSTKRKLEGKLLEDNPSSPQPVLPVSEPSLASDRETVSPAIAIATAPCIPQSPAKKMEVDSSSLQSTPARVV LTPTKLMSVTPAQCKQKRSSTTLTPDGGSNSLPNKLVRRLPVHDDDDDLPESLLESIREKQRKADEEKDPAISQAKRRRKMIASSPKLFDTIRFLFQSIN RSVITKEELIHKIVAGQLGIADRREIEERLNLLEELLPEWISEKKALSGDLLCW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10024879 [exp]	0	1
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	3.9	0.9332
AT2G42450			alpha/beta-Hydrolases superfam...		Lus10000708 [exp]	4.0	0.9330
AT4G14368			Regulator of chromosome conden...		Lus10030999 [exp]	5.7	0.9268
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	7.0	0.9359
AT2G36200			P-loop containing nucleoside t...		Lus10022697 [exp]	7.7	0.9294
AT3G56370			Leucine-rich repeat protein ki...		Lus10025139 [exp]	7.7	0.9225
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	9.8	0.9352
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10040996 [exp]	11.6	0.9074
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Lus10037478 [exp]	14.8	0.9248
AT3G42660			transducin family protein / WD...		Lus10021720 [exp]	17.3	0.9279

Compare expression of checked genes

Lus10024879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.