Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31260 826 / 0 ATAPG9, APG9 autophagy 9 (APG9) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003567 [exp] 1018 / 0 AT2G31260 1093 / 0.0 autophagy 9 (APG9) (.1) Lus10033881 [exp] 983 / 0 AT2G31260 1021 / 0.0 autophagy 9 (APG9) (.1) Lus10000709 [exp] 691 / 0 AT2G31260 477 / 2e-160 autophagy 9 (APG9) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G039900 [exp] 912 / 0 AT2G31260 1021 / 0.0 autophagy 9 (APG9) (.1) Potri.005G222800 [exp] 905 / 0 AT2G31260 952 / 0.0 autophagy 9 (APG9) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04109 [flax] [poplar] APG9 Autophagy protein Apg9
Representative CDS sequence Show only first row Show all	>Lus10024880 pacid=23178990 polypeptide=Lus10024880 locus=Lus10024880.g ID=Lus10024880.BGIv1.0 annot-version=v1.0 ATGATGTTCAGTGGAACAAGCTCTAATATCCTCAAGAAATTTAAATGGAGATGGCATCATGGAGACTCCACTTTGACAACAGGCTTGCTCAGCGATACAG CACCGGAGATTGAGCTGTCCGGTTATGGAACGACAGAGAGTCCTGGTAGTGAAAGCCCTTCTGGACTTCTCAATGGCGAAAGCTTGAAACTTGAGCTGAT TGCTGACCTGGACCTGTTCTTTGAGAGGCTCTACAGTTACTACTGTGAGAAAGGGCTTTGGTGCATTGTTATAAAATGGATTTTCGAGCTTATGAGCCTT GGTTTCACCATCTTTTTCTCGGGGTTTTTCTTACTGTACGTTGACTGGAATGGTCTACGTAATGCTAAATGTGGGATCGATGCACTTGAATCCGGAACCA AGCCTTGCTATTTGGCATTGTTCTCCGTCTTTTCGGTGTTTGGCTTCTTCAGATTCTTCTCTCAACTCAAAGAGACCCTTTGGATCCGTCGATTCTATCA TGAGAGCCTTCATGTAACAGACAAAGAGATTCTAACTATGCCTTGGGAAACAGTCCTTGAAAAGGTCGTCCACCTGCAAAACTCACAACAACTTTGCCTG GTCAAAGATCTGTCAATCCATGATATAGTCATGAGATTGATGCGGAAAGAGAACTACTTGATCAGAATGCTGAACAAAGGGGTACTCGCGTTCTCTATAC CGTCATGGATTCCAGGTGCAGGGCCAACTATCAAAATCGGCTCTGATGGAACTCAATATCGCTTGATTCTTACAAAGACTCTTGAATGGACGTTGAATTG GTGCATACTGCAAAGCATGCTCGACCGAAACTTCTGTGTTAAGATGGACTTCATCTCAAATCCTAAAACATTAAAGAAGCAATTTATGATTGTTGGTCTT GCAATGATTCTACTTTCGCCATTTCTCGTCATATTCATGGTAGTGTATCTCTTCTTAAGACATGCTGAGCAGTTCTATAATCATCCCAGCACAGCAGCAT CTCGTTGGTGGTCGAATTTATCTCGGTGGATTTTTCGAGAATTCAATGAGGTTGACCATTTCTTCAAGCATCGAATTACAAGCAGTATCAGTCATGCTGC AGATTATCTAAAACAGTTCCCATCACCTATGATTTCAATTGTTGCAAAGTTTATCTCTTTTGTCTCTGGTGGATTTGCTGCCGTTCTACTGATTATTGCA TTTATGGAGGAGTCTTTACTGGAGGGTCATATTTTCGGACGCAACTTGCTTTGGTATGCTGCTGTTTTCGGAACTATGACAGCCATCAGCCGAGCTGCAG TAACTGATGATCTCCTAGTTCTTGAACCAGATGGAGCAATGTCTATGGTGATACAACATACTCATTATGTGCCCAAGAGATGGCGGGGCAACGAACATAC CGAGACAGTTAGAATGGACTTTGAAACCTTATTTCAGTATACCGGTACGATGCGGCTCGAGGAGATGGCATCTATATTCCTCACTCCATTCCTGCTTTTA TTCGTCGTGCCAAAGCATGGTAACAGCAACTATGGTTCGCATTGCAATGCACCTCGCACTAGAAGGAGTTCGCAGGGAAAGATGGGGAAATCAATGTTGA GCTTCAAGAGTAGTTATCCTTCATGGGAACCAAATGCTCAAGGGAAGCAGTTCCTGGCAAAGGTTGGAACTTTCAGAGAGCAGATGCTTCAACGATCAGG AATTAGACATATGTATAATCACTATCATCCTCAATTGTTTCATGGGAGCCCGGTAAGACCATATAATCTGGATCAGAGAAATCATTATCCGTATCTTCTG GACTGGTACTACACCTCTCAAGCTTGCCATTCAGCGAACAATAATGAAGATTTTCGGAACCCTTCTTCCTCCGATTTCGTACTGAATGATGCAAGACATG ATGACGATGAAGAGTACTGCTTCAATGATCGGCCAGAATCGCACCTCCAGACTTCCACATCTGCAACATACTTCCGGGGGAGTGTGATCCGGCACGAGGA CTCCACTCATCCTAGTGGTGGAAGCCATTGGTGGTGGGGTAGAAGAGACTCGGATAAACAACAACCCCAAGCTAGTTTCCTCGAGCCGCCACCTGATTTC AACCGATACAAACCGAGTAGCAACTTAGAGAACTTGTTGGAAACAAGCACGGAGGAATTGGAAGATCAGAACCTGGATTTGAGAAATAATGCTCTTAGTC TGTCCAGGACTGCTTACTTATATGATGACGATGATGACATTGAAGCAGGAGGAGGAAGTTCTAGTCTGCATTTCCACGATGTTTATGACAGCAGAAGTAA TTAA
AA sequence Show only first row Show all	>Lus10024880 pacid=23178990 polypeptide=Lus10024880 locus=Lus10024880.g ID=Lus10024880.BGIv1.0 annot-version=v1.0 MMFSGTSSNILKKFKWRWHHGDSTLTTGLLSDTAPEIELSGYGTTESPGSESPSGLLNGESLKLELIADLDLFFERLYSYYCEKGLWCIVIKWIFELMSL GFTIFFSGFFLLYVDWNGLRNAKCGIDALESGTKPCYLALFSVFSVFGFFRFFSQLKETLWIRRFYHESLHVTDKEILTMPWETVLEKVVHLQNSQQLCL VKDLSIHDIVMRLMRKENYLIRMLNKGVLAFSIPSWIPGAGPTIKIGSDGTQYRLILTKTLEWTLNWCILQSMLDRNFCVKMDFISNPKTLKKQFMIVGL AMILLSPFLVIFMVVYLFLRHAEQFYNHPSTAASRWWSNLSRWIFREFNEVDHFFKHRITSSISHAADYLKQFPSPMISIVAKFISFVSGGFAAVLLIIA FMEESLLEGHIFGRNLLWYAAVFGTMTAISRAAVTDDLLVLEPDGAMSMVIQHTHYVPKRWRGNEHTETVRMDFETLFQYTGTMRLEEMASIFLTPFLLL FVVPKHGNSNYGSHCNAPRTRRSSQGKMGKSMLSFKSSYPSWEPNAQGKQFLAKVGTFREQMLQRSGIRHMYNHYHPQLFHGSPVRPYNLDQRNHYPYLL DWYYTSQACHSANNNEDFRNPSSSDFVLNDARHDDDEEYCFNDRPESHLQTSTSATYFRGSVIRHEDSTHPSGGSHWWWGRRDSDKQQPQASFLEPPPDF NRYKPSSNLENLLETSTEELEDQNLDLRNNALSLSRTAYLYDDDDDIEAGGGSSSLHFHDVYDSRSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10024880 [exp]	0	1
AT1G01440			Protein of unknown function (D...		Lus10001910 [exp]	7.9	0.7870
AT5G01700			Protein phosphatase 2C family ...		Lus10014231 [exp]	20.8	0.7731
AT3G02750			Protein phosphatase 2C family ...		Lus10022683 [exp]	20.9	0.7770
					Lus10015702 [exp]	25.8	0.7671
					Lus10033349 [exp]	30.4	0.6524
					Lus10002418 [exp]	34.6	0.7607
AT1G24110			Peroxidase superfamily protein...		Lus10029201 [exp]	35.7	0.7281
AT5G17680			disease resistance protein (TI...		Lus10041060 [exp]	39.3	0.7383
AT2G01260			Protein of unknown function (D...		Lus10017987 [exp]	40.6	0.6658
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	43.6	0.7528

Compare expression of checked genes

Lus10024880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.