Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04360 141 / 8e-39 RING/U-box superfamily protein (.1) AT5G43420 134 / 3e-36 RING/U-box superfamily protein (.1) AT3G16720 83 / 4e-18 ATL2 TOXICOS EN LEVADURA 2 (.1) AT5G40250 79 / 2e-16 RING/U-box superfamily protein (.1) AT3G48030 77 / 9e-16 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT1G72220 77 / 1e-15 RING/U-box superfamily protein (.1) AT1G23980 76 / 3e-15 RING/U-box superfamily protein (.1) AT5G17600 75 / 8e-15 RING/U-box superfamily protein (.1) AT3G03550 74 / 1e-14 RING/U-box superfamily protein (.1) AT3G18930 74 / 2e-14 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000710 [exp] 516 / 0 AT1G04360 155 / 3e-44 RING/U-box superfamily protein (.1) Lus10021197 [exp] 134 / 2e-36 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1) Lus10012975 [exp] 83 / 2e-17 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10015167 [exp] 81 / 6e-17 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10034953 [exp] 80 / 1e-16 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10019973 [exp] 77 / 1e-15 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10009511 [exp] 77 / 2e-15 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10012745 [exp] 76 / 2e-15 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10000333 [exp] 76 / 4e-15 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G039700 [exp] 224 / 3e-71 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.010G072700 [exp] 172 / 8e-51 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.008G165900 [exp] 167 / 6e-49 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.010G206200 [exp] 74 / 6e-16 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 77 / 2e-15 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 76 / 2e-15 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 75 / 5e-15 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 75 / 5e-15 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.009G110000 [exp] 75 / 9e-15 AT3G18930 227 / 5e-70 RING/U-box superfamily protein (.1.2) Potri.005G160900 [exp] 74 / 2e-14 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10024881 pacid=23178884 polypeptide=Lus10024881 locus=Lus10024881.g ID=Lus10024881.BGIv1.0 annot-version=v1.0 ATGTCTTCACAAACATCAGACAACAACACTTCACCAGTCCTAACAATCTCAATCCTCTGCATCGTCGGAGCATCAGCTCTCTTCCTCCTCGCATACTATG TCTTCTTCCACAAATGCTCCTCCTCCTTCCTCCACTTCTTCAACCTCACCACAGATCCTGCAGCAGCAGAGGAGGACTCCTTCATCGCCCTCTCCCCGAC CACCAACTGGACTCGAACCATCGGCCTCGACGACTTCGCCATTCAAGACCTCCCCACTCGACACTACTACCACCACCACACAACAGCAACAACAGAAACA ACAGAAACAACCGTTGATTACTTCAAATGCGTGGTGTGTCTGAATGACTTCCACGAACACGACATCCTTAGAGTCCTCCCCAACTGCGCGCATTCCTTCC ACTTGGACTGCATCGACGTCTGGCTCCACTCCAACTCCAATTGCCCCATATGCAGGACCGGAATCAATTCTTCTTCCTCCTCCTCTGCATTCGGGTTTGT TGCTCCCATGTCTTCACCACAAAGGGACGCGGAGAGCGTGATCGGGAGTGACGAGGATTTCGTGGTGATTGAGTTGGGCGGAGGAGGTGGGGACTGTAAC GGAATTGCCAGGAGCGATTCGATGAGGAGAAAACAGAGTCCTCCGTTGAAACAGAGTACTCCAGGAAAACAGGGGAAGCGTCGAAATGCGTCAATAATGG GGGATGAAGGGATCGATATGAGGGGTGGTGGTGATCGGTTTATGGTTGAGTATCCGATGAGGAGGTCATTCTCGTGGGGTTCGGCTGCGGATCGGCAGCT GTTGTCGAGTGTTCGAGCTGTGGTTCGACAGAACAGTCAGTCGAGGTGTTGTGATGAAGCAGAGAGTGGTAGTAGCAGCAGCAGGGGAAAGAGGTTGTTC CTCCCGTTTGGTAAAATTCGAGGTTCTAGAAACAACAATGCGGTTACTCCGTTGAAATCCGATGTTTGTTTCAGTTAG
AA sequence Show only first row Show all	>Lus10024881 pacid=23178884 polypeptide=Lus10024881 locus=Lus10024881.g ID=Lus10024881.BGIv1.0 annot-version=v1.0 MSSQTSDNNTSPVLTISILCIVGASALFLLAYYVFFHKCSSSFLHFFNLTTDPAAAEEDSFIALSPTTNWTRTIGLDDFAIQDLPTRHYYHHHTTATTET TETTVDYFKCVVCLNDFHEHDILRVLPNCAHSFHLDCIDVWLHSNSNCPICRTGINSSSSSSAFGFVAPMSSPQRDAESVIGSDEDFVVIELGGGGGDCN GIARSDSMRRKQSPPLKQSTPGKQGKRRNASIMGDEGIDMRGGGDRFMVEYPMRRSFSWGSAADRQLLSSVRAVVRQNSQSRCCDEAESGSSSSRGKRLF LPFGKIRGSRNNNAVTPLKSDVCFS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04360			RING/U-box superfamily protein...		Lus10024881 [exp]	0	1
AT1G04360			RING/U-box superfamily protein...		Lus10000710 [exp]	1.0	0.9154
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10017339 [exp]	2.4	0.8140
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	3.7	0.8211
AT1G49740			PLC-like phosphodiesterases su...		Lus10019843 [exp]	4.0	0.7033
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	5.7	0.8072
AT1G06980			unknown protein		Lus10038171 [exp]	13.0	0.7516
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10041571 [exp]	13.4	0.7179
AT1G69080			Adenine nucleotide alpha hydro...		Lus10019173 [exp]	13.4	0.6914
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	13.6	0.7677
AT5G07800			Flavin-binding monooxygenase f...		Lus10003474 [exp]	14.1	0.7195

Compare expression of checked genes

Lus10024881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.