Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24530 258 / 3e-84 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 229 / 7e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 228 / 3e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 205 / 3e-63 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 197 / 8e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 187 / 1e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 187 / 2e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 186 / 5e-56 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G08640 182 / 6e-55 ATFLS1, FLS flavonol synthase 1 (.1.2) AT3G19000 179 / 1e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000711 [exp] 639 / 0 AT5G24530 263 / 4e-86 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035782 [exp] 278 / 7e-92 AT5G24530 258 / 4e-84 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 251 / 1e-81 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 251 / 2e-81 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 221 / 7e-70 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037292 [exp] 202 / 1e-61 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10023890 [exp] 198 / 2e-60 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 196 / 2e-59 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006518 [exp] 191 / 8e-58 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G223000 [exp] 335 / 1e-114 AT4G10500 238 / 3e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G039500 [exp] 329 / 4e-112 AT4G10500 244 / 1e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G013600 [exp] 321 / 6e-109 AT4G10500 235 / 4e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G039600 [exp] 263 / 9e-87 AT4G10500 194 / 8e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 256 / 1e-83 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 255 / 4e-83 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 240 / 4e-77 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 237 / 5e-76 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 233 / 2e-74 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 229 / 7e-73 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10024882 pacid=23178872 polypeptide=Lus10024882 locus=Lus10024882.g ID=Lus10024882.BGIv1.0 annot-version=v1.0 ATGGCGAAACTCGTTTCTAGCTGGTACAAAGAAGTCAAATCCCTGCCGGAAAGCTACATACTACCACCGGATGAACGCCCCGGGATCCACCCGGTTCCAG TCAGCGACGAGATCCCCGTGGTGGATCTCGAACAACCCGACTCGACACAGCTCATTCTCAAGGCATGCCAGGAATTCGGTTTCTTCCAGGTGATTAACCA TGGAGTCAAGGAGGAGTTGATGGAGGAAGGGATGAAGTTGTTCTCTGAGTTCTTCGGCATGGCAGAGGAGGAGAAAGCAGAGTTTTACTCCGAAGAGCCG CAGTCGATTCCGTGCGTGGTTAGCACCAGCAGTGGGACTAACGTGGATAATGAAAAGGTGCATTTTTGGCGTGATATGCTCAGGCACAGTTGCTATCCGC TTCATGAAAACGTCCCCTTTTGGCCTCAGAAACCTCCAGCATACAGAGAGGTAGTGGGAGAGTGCTCAATGGAAGTGAGGAAGCTAGGAATGAGAATACT GGAGAAGATCAGCCAAGGTCTAGGACTTAAGAGCACTGAATACTTGGAACAATGTAGCAAATACATGTACTTGCAAGTGAACCATTACCCACCATGCCCC GACCCAACCCTCAGTCTCGGGCTCTACAAGCACTGCGACCCGACCACCCTAACCATCCTGCGACAAGACTCTTACGGCCTACAAGTCTTGAAGGACGGAC AATGGATCGGAGTCCAGCCCATTCCCAACGCTTTCGTCGTCAACGTCGGCCACCAATTACAGGTGATCAGTAACGGGAAGCTGAAGAGCGCGGAGCACAG AGCAGTGACGAACTCGAGCAAAGCGAGAACATCAGCTGCATTCTTCATGCATCCCGACACCGACGTTGTGGTTGAACCGGCGGATATTCTAGTGGATGAG TCGAACCCACCCCGATATAAGGCGTTTCAATATGTAGACTACATGAGGCAGTACAGTGCGAACCGTGGACACGTTGAGAAAACCATCAAGCCGTTCGAGC TCTAA
AA sequence Show only first row Show all	>Lus10024882 pacid=23178872 polypeptide=Lus10024882 locus=Lus10024882.g ID=Lus10024882.BGIv1.0 annot-version=v1.0 MAKLVSSWYKEVKSLPESYILPPDERPGIHPVPVSDEIPVVDLEQPDSTQLILKACQEFGFFQVINHGVKEELMEEGMKLFSEFFGMAEEEKAEFYSEEP QSIPCVVSTSSGTNVDNEKVHFWRDMLRHSCYPLHENVPFWPQKPPAYREVVGECSMEVRKLGMRILEKISQGLGLKSTEYLEQCSKYMYLQVNHYPPCP DPTLSLGLYKHCDPTTLTILRQDSYGLQVLKDGQWIGVQPIPNAFVVNVGHQLQVISNGKLKSAEHRAVTNSSKARTSAAFFMHPDTDVVVEPADILVDE SNPPRYKAFQYVDYMRQYSANRGHVEKTIKPFEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10024882 [exp]	0	1
					Lus10005395 [exp]	3.6	0.9241
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015518 [exp]	3.9	0.9022
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10006059 [exp]	6.7	0.8888
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	7.3	0.9088
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10029370 [exp]	9.2	0.8850
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10034623 [exp]	9.8	0.8030
					Lus10026715 [exp]	11.3	0.8979
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10039202 [exp]	12.0	0.8336
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	12.1	0.8468
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	14.0	0.8529

Compare expression of checked genes

Lus10024882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.