Plant FIBer expression Database

Lus10024887 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65660 799 / 0 SMP1 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
AT4G37120 762 / 0 SMP2 SWELLMAP 2, Pre-mRNA splicing Prp18-interacting factor (.1)
AT3G45950 479 / 2e-167 Pre-mRNA splicing Prp18-interacting factor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022931
[exp]
955 / 0 AT1G65660 895 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Lus10028956
[exp]
919 / 0 AT1G65660 891 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Lus10030817
[exp]
332 / 4e-100 AT1G70060 1426 / 0.0 SIN3-like 4 (.1)
Lus10007480
[exp]
168 / 2e-50 AT4G37120 170 / 6e-52 SWELLMAP 2, Pre-mRNA splicing Prp18-interacting factor (.1)
Lus10007479
[exp]
142 / 8e-41 AT1G65660 124 / 5e-35 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G048200
[exp]
840 / 0 AT1G65660 830 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Potri.012G064100
[exp]
837 / 0 AT1G65660 801 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11708 Slu7 Pre-mRNA splicing Prp18-interacting factor
Representative CDS sequence
>Lus10024887 pacid=23178969 polypeptide=Lus10024887 locus=Lus10024887.g ID=Lus10024887.BGIv1.0 annot-version=v1.0
ATGGCGACTGCTTCAGGTGCCTTCAAGTCCAGAGAGGATCATAGGAAGCAGATTGAATTGGAGGAAGCGCGTAAAGCTGGTCTTGCCCCTGCCGAAGTTG
ATGAAGATGGAAAAGAGATCAATCCTCATATTCCTCAGTATATGTCCTCAGCGCCTTGGTACCTTAATGCTGAGACGCCTAGTTTGAAACATCAAAGGAA
ATGGAAGTCGGATCCAAACTATTCAAAATCGTGGTATGATAGAGGTGCCAAAGTGTATCAAGCCGCTAAGTACAGGAAAGGCGCTTGTCAGAACTGTGGA
GCCATCACACATGATTTGAAATCTTGCATGGATAGACCTAGGAAAATCGGGGCGAAGTGGACTAACACGCACATTGCTCCTGATGAAAAGATTGAGACTT
TCGAGCTTGATTACGATGGCAAGCGTGATCGCTGGAATGGGTACGATGCTGCCAGCTATGCTCTTGTTGTTGAGCGGTACGAAGCTCGAGATGCTGCCAG
GAGTCGTTACGTGAAGGAGCAGCAGCTTAAGAAGCTGGAGGAGAAGGACAACGGCCAGACTGATGCAGAGGATGTTAGTGATGAGGACAATGACGAAGAT
GATCTGAGGGTGGATGAAGCAAAGGTCGACGAATCAAAGCAAATGGACTTTGCTAAGGTCGAGAAGCGTGTCAGGACAACTGGCGGTGGTAGCACTGGAA
CGGTCAGGAACTTGCGTATTCGGGAAGATACAGCAAAGTATCTCTTGAATCTTGATGTCAATTCCGCTTACTATGATCCGAAAACACGTTCCATGCGTGA
GGACCCTCTCCCAGATGCAGATCCTAACGAGAAGTTCTATTTGGGAGACAATCAGTACAGAAATAGTGGTCAAGCTGAGGAGTTCAAGCAGCTTAATGTC
CATGCTTGGGAAGCTTTTGATAAGGGTCAAGATATTCACATGCAAGCTGCTCCTTCTCAAGCAGAGTTGCTGTATAAGAATTTTAAGGTGATAAAGGAGA
AACTCGAGACCCAGACAAAGGATCAAATGCTTGAGAAGTATGGGAATGCTGCCAGCCTAGACCCGATTCCGAAAGAACTTTTGCTTGGTCAGAGTGAACG
TCAAGTCGAGTACGATCGTGCTGGAAGACTTATCAAGGGACAGGAAGTTGCGGTACCGAAAAGCAAGTACGAAGAAGATATCTACGTCAACAACCACACA
AGTGTATGGGGGTCATGGTGGAAGGATCATCAGTGGGGATACAAATGCTGCAGGCAGAGCGTTCGAAACAGTTACTGCACTGGTGCTGCCGGAATCAAGG
CAGCCGAGGCCGCAACAGATCTGATGAAGGCAAATATCGCTCGGAAAGAAGCTGATGATGATGAGATTCCGGAACCCGTAGAGGAGAAGAGGCTCGCTAC
TTGGGGTTCGGAGGTACCCGATGATCTGGTGTTGGATGAGAAGCTGCTGGCCGAATCGCTGAAGAAGGAAGACCAGAGGAAGAAAGAGGAGAAGGACGAG
AGGAAACGGAAATATAATGTGAAGTGGAATGATCAGGTTACTGTTGAGGATATGGAGGCGTATCGGATGAAGAAAGTTCATCATGATGATCCAATGAAGG
ATTTCCTTAACTGA
AA sequence
>Lus10024887 pacid=23178969 polypeptide=Lus10024887 locus=Lus10024887.g ID=Lus10024887.BGIv1.0 annot-version=v1.0
MATASGAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAETPSLKHQRKWKSDPNYSKSWYDRGAKVYQAAKYRKGACQNCG
AITHDLKSCMDRPRKIGAKWTNTHIAPDEKIETFELDYDGKRDRWNGYDAASYALVVERYEARDAARSRYVKEQQLKKLEEKDNGQTDAEDVSDEDNDED
DLRVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQAEEFKQLNV
HAWEAFDKGQDIHMQAAPSQAELLYKNFKVIKEKLETQTKDQMLEKYGNAASLDPIPKELLLGQSERQVEYDRAGRLIKGQEVAVPKSKYEEDIYVNNHT
SVWGSWWKDHQWGYKCCRQSVRNSYCTGAAGIKAAEAATDLMKANIARKEADDDEIPEPVEEKRLATWGSEVPDDLVLDEKLLAESLKKEDQRKKEEKDE
RKRKYNVKWNDQVTVEDMEAYRMKKVHHDDPMKDFLN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G65660 SMP1 SWELLMAP 1, Pre-mRNA splicing ... Lus10024887
[exp]
0 1
AT1G64385 unknown protein Lus10032376
[exp]
4.0 0.9071
AT3G18620 DHHC-type zinc finger family p... Lus10040971
[exp]
8.1 0.9003
AT5G51970 GroES-like zinc-binding alcoho... Lus10027410
[exp]
8.5 0.8624
AT3G22630 PRCGB, PBD1 20S proteasome beta subunit D1... Lus10021909
[exp]
11.0 0.8989
AT2G01490 phytanoyl-CoA dioxygenase (Phy... Lus10007925
[exp]
14.0 0.8996
AT3G07560 APM2, PEX13 ABERRANT PEROXISOME MORPHOLOGY... Lus10012306
[exp]
14.4 0.9069
AT3G22845 emp24/gp25L/p24 family/GOLD fa... Lus10039381
[exp]
16.1 0.8980
AT5G16370 AAE5 acyl activating enzyme 5 (.1) Lus10013773
[exp]
18.4 0.8895
AT5G51700 ATRAR1, RPR2, P... Required for Mla12 resistance ... Lus10031107
[exp]
20.8 0.8888
AT1G72710 CKL2 casein kinase 1-like protein 2... Lus10006879
[exp]
21.9 0.8936

Lus10024887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.