Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36070 380 / 2e-128 ATTIM44-2 translocase inner membrane subunit 44-2 (.1) AT2G20510 363 / 1e-121 ATTIM44-1 translocase inner membrane subunit 44-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022930 [exp] 522 / 0 AT2G36070 464 / 1e-159 translocase inner membrane subunit 44-2 (.1) Lus10003553 [exp] 521 / 0 AT2G36070 524 / 0.0 translocase inner membrane subunit 44-2 (.1) Lus10033894 [exp] 308 / 4e-102 AT2G20510 343 / 8e-116 translocase inner membrane subunit 44-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038300 [exp] 453 / 6e-157 AT2G36070 584 / 0.0 translocase inner membrane subunit 44-2 (.1) Potri.005G224500 [exp] 425 / 8e-146 AT2G36070 545 / 0.0 translocase inner membrane subunit 44-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF04280 [flax] [poplar] Tim44 Tim44-like domain
Representative CDS sequence Show only first row Show all	>Lus10024888 pacid=23178864 polypeptide=Lus10024888 locus=Lus10024888.g ID=Lus10024888.BGIv1.0 annot-version=v1.0 ATGGCAGCTAGAAAGCTTGTCCGAGACTTGCTCTTAGCAAGGCAGCCCGTCCTCCAACAATTCAAGTCTCCTCAGGGTTTAGCCACTACGTCAAGGTTGC TGGTGGACAATCGGTGGTCAAGTTACCGGAGGTTTGGTGTGTTCAATAAAGTTAAAGAAGAAGCTAATAGGAATCCGGAGTTGCAGAAGTCGGTTAAAGA GCTGAAGGAGAAAGCAGAGGAGCTCAAAGGTGTGAAAGAGGACCTGAAAGTTAGAACGAAGCAGACTGCTGAGAAGCTTTACAAGCATGTTGATGGCGTA TGGACGGAGGCTGAAGCCACTGCGAAGAAGGTTTCCTCGAGTGTCAAGGAGAAGATTTCGGCTGCTACAGAAGAGGTGAAAGGAACTTTCAAAATGGGGA AGCAAGAGTCCTCTGAGCCCACTGGCACTGAAGATGGTCCTGACATCAAAGAGAAGACTAACTCGGCTGGTGAAGAAACAAGCACAAAATCTCAGGCTAA TGAATCTGCAGAAACATTTTTTGGAAAGTTCAAGTCTAGAATCCCTTCTGAAAAAGTCTCCTCCGCCTTCCAAAAGTTGAAGGAGGCAAAGGTCACTGAA ATAATGAAGAAGGGCTATGCCATTGTGAAGGATGAGTTGAGTGGCAACTCAAATGCAAGAAAGCACCTTGAATTTACTCCTTTCAAAGGAGATCTAAGTA CAAAAACCGAGATTGTTCCAATGTCAAATCCTAAACAGTCTCGGTTGAGTGAAAAGTGGGAAGCTTTCAGAAAGAAGATGCAAGGTAATCCTGTTTTCAA ACGCTTCTCTGGTATTAGTCAACCTGTAGTGACAAAGGGTCAAGAGATTGCTGAAGACATGCGGGAGAGATGGGAGACTAGTGACAATCCCATTGTTCAC AAAATTCAGGAATCGTTTTCTTTGCCAGATTTTGTTTCTGAGGTTCAAGATGCCATTCGACCGGTCCTTAATGCTTATATGAAGGGAGATACTGAAACGC TGAAGAAGTATTGCAGCCCCGAAGTAATTTCTCGGTGCGAAGGAGAGCATAATGCTTTCAAAAGCCATGGCATTTTCTTTGACAACAGGCTTCTTCATGT ATCTGAGGTGGAAGTAAGAGAGACCAAAATGATGGGAACATCTCCAATCATAATCGTAGCGCAGGAGCTTGCTTCAGTTTGTGAGGTGGCCGTTAACGCA GATCCACTGTCCGACGAAGAGACCGTTGCAGTTGAGGTTAGGATTGAGGAACCTGAACTCGGAAGTTGTCAAACTGAAACTTTGCTGTATGGCTACACAG ATGTCTCCGCTTTCGACCCCATAAGCTCTGTTGCAAGCAATCTTTGCTGGTTCGCCAACTTTTGCTCCAATGCTAACTGA
AA sequence Show only first row Show all	>Lus10024888 pacid=23178864 polypeptide=Lus10024888 locus=Lus10024888.g ID=Lus10024888.BGIv1.0 annot-version=v1.0 MAARKLVRDLLLARQPVLQQFKSPQGLATTSRLLVDNRWSSYRRFGVFNKVKEEANRNPELQKSVKELKEKAEELKGVKEDLKVRTKQTAEKLYKHVDGV WTEAEATAKKVSSSVKEKISAATEEVKGTFKMGKQESSEPTGTEDGPDIKEKTNSAGEETSTKSQANESAETFFGKFKSRIPSEKVSSAFQKLKEAKVTE IMKKGYAIVKDELSGNSNARKHLEFTPFKGDLSTKTEIVPMSNPKQSRLSEKWEAFRKKMQGNPVFKRFSGISQPVVTKGQEIAEDMRERWETSDNPIVH KIQESFSLPDFVSEVQDAIRPVLNAYMKGDTETLKKYCSPEVISRCEGEHNAFKSHGIFFDNRLLHVSEVEVRETKMMGTSPIIIVAQELASVCEVAVNA DPLSDEETVAVEVRIEEPELGSCQTETLLYGYTDVSAFDPISSVASNLCWFANFCSNAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10024888 [exp]	0	1
AT2G26200			S-adenosyl-L-methionine-depend...		Lus10024993 [exp]	3.2	0.8695
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10034339 [exp]	8.1	0.8348
AT5G58100			unknown protein		Lus10027581 [exp]	10.2	0.8495
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10014756 [exp]	10.9	0.8010
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	11.5	0.8650
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	12.4	0.8582
AT5G64150			RNA methyltransferase family p...		Lus10015342 [exp]	12.7	0.8468
AT1G73020			unknown protein		Lus10009732 [exp]	13.3	0.8567
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	22.7	0.8383
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	23.5	0.8432

Compare expression of checked genes

Lus10024888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.