Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44120 398 / 8e-135 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT1G03880 354 / 5e-118 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT1G03890 352 / 3e-117 RmlC-like cupins superfamily protein (.1) AT4G28520 271 / 7e-85 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4) AT2G28680 125 / 6e-32 RmlC-like cupins superfamily protein (.1) AT1G07750 115 / 3e-28 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022929 [exp] 775 / 0 AT5G44120 340 / 9e-113 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 746 / 0 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022927 [exp] 740 / 0 AT5G44120 424 / 5e-145 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10010341 [exp] 438 / 2e-150 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 433 / 4e-148 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021179 [exp] 426 / 2e-145 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011817 [exp] 397 / 2e-134 AT5G44120 358 / 2e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011816 [exp] 390 / 6e-132 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021868 [exp] 345 / 4e-115 AT5G44120 330 / 2e-109 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224700 [exp] 550 / 0 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 540 / 0 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 454 / 2e-156 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G308050 [exp] 452 / 4e-156 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 451 / 3e-155 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 442 / 1e-151 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 438 / 3e-150 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224400 [exp] 330 / 1e-108 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.008G102900 [exp] 123 / 4e-31 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G047200 [exp] 121 / 2e-30 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10024889 pacid=23178955 polypeptide=Lus10024889 locus=Lus10024889.g ID=Lus10024889.BGIv1.0 annot-version=v1.0 ATGGCTAGATCAAGCCCTTTGCTTCTGACATTCTGCATCTTCGCCATCCTCTTCCACTCTTCTCTGGGTAGGCAGCAATTCCAGCAGGGTAACGAGTGCC AGATCGACAGGATCGACGCATCCGAGCCGGACAGCACCATCCAGGCAGAAGCTGGTACCGTCGAGGTATGGGACCAGAACCGCCAGCAATTCCAGTGCGC TGGTGTTGCCATGGTGAGACGTACCATTGAGCCCAATGGCCTCCTCTTGCCTTCCTACAGCAACACCCCTCAGCTCATCTACATCATTCAAGGAAATGGA CGCACAGGAATGCTGTTGCCAGGTTGCCCAGAGACATTCGAGGAATCACAACAGACCGGTCAACAAGGCTACAGAGGAGAACAACAGGGTACTTCCCAAG ACCAGCACCAGAAGATAGTCCGCTTCCGTAAAGGTGACGTCATTGCTATCCCCGCCGGTGTAGCTCACTGGTGCTACAACGATGGCAATGAGCCTGTCGT CACCGTCACTGTCCATGACACCTCCAGCCACCTGAACCAGCTTGACAACAACCCCAGGACCTTCTACCTGGCTGGGAACCCTAGAGACGAGTTCGAGCAA TCACAGCAGAAAAGATTCATCAGCAGGAGCGACAGGCAGAGCCAAGGCAGCTGCAACAACCTCTTCTGCGGGATGGACTCCAGATTCCTGGCCGAGGCGT TCAACATCGACGAGAACTTGGCGAGGAAGTTGCAGAGCGAGAACGACAACAGGGGCAGCATTGTCCGAGTCGAAGGCGAGCTTGCCTTTGTGAGACCTCC GTCCAGCATGAGGGAAGAACGACAGGAGCAGGGAGGCAGCGGCAGTGGACGCTACCACGCCAATGGAGTGGAGGAGACCTTCTGTTCCATGACAATGGTT GAGAACATCGGCAAACCTTCTCGGGCCGACATTTTCACTCCGGAAGCCGGCTGCGTCAGCATCGGCAAACCTTCTCGGGCCGACATTTTCACTCCGGAAG CCGGCCGCATCAGATCCCTCAACAGCCACAACCTCCCCGTCCTTCAATGGATCCAGCTCAGCGCCGAGAGAGGCGTTCTCTACAACGAGGCGATCAGGCT GCCCCACTGGAACATCAACGCGCACAGCATAATCTACGCGATCAGAGGACAGGCTCGGGTCCAGATCGTGAACGAGAACGGGAACTCGGTGTTCGACGGA GTTCTGCAGGAAGGGCAGGTGGTGACGGTGCCGCAGAACTTCGCGGTGGTGGAGAGATCCCAGAGCGAGAGGTTCGAGTGGGTGGCGTTCAAGACGAACG ACAACGCGATGGTGAACTCGCTGGCGGGTAGGACATCGGCAATAAGGGCGATCCCGGCGGAGGTTCTGGCTAACGCGTGGAGGGTGTCGCCGGAGGAGGC GAGGAGGTTGAAATTCAAACGCCAGGAGACTCACTTGGCCAGCACGAGGTCTCAGTCCTTCAGGGCTGAAGCTTAA
AA sequence Show only first row Show all	>Lus10024889 pacid=23178955 polypeptide=Lus10024889 locus=Lus10024889.g ID=Lus10024889.BGIv1.0 annot-version=v1.0 MARSSPLLLTFCIFAILFHSSLGRQQFQQGNECQIDRIDASEPDSTIQAEAGTVEVWDQNRQQFQCAGVAMVRRTIEPNGLLLPSYSNTPQLIYIIQGNG RTGMLLPGCPETFEESQQTGQQGYRGEQQGTSQDQHQKIVRFRKGDVIAIPAGVAHWCYNDGNEPVVTVTVHDTSSHLNQLDNNPRTFYLAGNPRDEFEQ SQQKRFISRSDRQSQGSCNNLFCGMDSRFLAEAFNIDENLARKLQSENDNRGSIVRVEGELAFVRPPSSMREERQEQGGSGSGRYHANGVEETFCSMTMV ENIGKPSRADIFTPEAGCVSIGKPSRADIFTPEAGRIRSLNSHNLPVLQWIQLSAERGVLYNEAIRLPHWNINAHSIIYAIRGQARVQIVNENGNSVFDG VLQEGQVVTVPQNFAVVERSQSERFEWVAFKTNDNAMVNSLAGRTSAIRAIPAEVLANAWRVSPEEARRLKFKRQETHLASTRSQSFRAEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024889 [exp]	0	1
					Lus10038255 [exp]	1.7	0.8836
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10024073 [exp]	3.0	0.8148
					Lus10032433 [exp]	4.2	0.8640
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	4.2	0.8717
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	5.3	0.8579
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10030750 [exp]	6.0	0.7924
					Lus10022880 [exp]	7.3	0.8356
					Lus10012012 [exp]	9.2	0.8029
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10032911 [exp]	10.2	0.8245
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	11.0	0.8445

Compare expression of checked genes

Lus10024889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.