Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45100 731 / 0 SETH2 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G73160 74 / 9e-14 UDP-Glycosyltransferase superfamily protein (.1) AT4G19460 57 / 1e-08 UDP-Glycosyltransferase superfamily protein (.1) AT5G01220 54 / 2e-07 SQD2 sulfoquinovosyldiacylglycerol 2 (.1) AT5G37180 50 / 4e-06 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT1G78800 46 / 5e-05 UDP-Glycosyltransferase superfamily protein (.1) AT1G73370 44 / 0.0002 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022925 [exp] 618 / 0 AT3G45100 536 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10034760 [exp] 67 / 2e-11 AT4G19460 636 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10033297 [exp] 64 / 9e-11 AT4G19460 620 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014499 [exp] 61 / 2e-09 AT1G73160 616 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10002499 [exp] 55 / 9e-08 AT5G01220 721 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10004832 [exp] 55 / 1e-07 AT5G01220 629 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10032187 [exp] 54 / 2e-07 AT1G73160 615 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10020791 [exp] 48 / 1e-05 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10007372 [exp] 47 / 3e-05 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G130000 [exp] 774 / 0 AT3G45100 749 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.016G112600 [exp] 59 / 3e-09 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.011G097000 [exp] 59 / 4e-09 AT1G73160 657 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G097600 [exp] 58 / 1e-08 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.003G105500 [exp] 58 / 1e-08 AT4G19460 664 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G128300 [exp] 52 / 6e-07 AT4G19460 645 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.015G029100 [exp] 44 / 0.0002 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 44 / 0.0003 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.018G063500 [exp] 44 / 0.0004 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF08288 [flax] [poplar] PIGA PIGA (GPI anchor biosynthesis)
Representative CDS sequence Show only first row Show all	>Lus10024892 pacid=23178880 polypeptide=Lus10024892 locus=Lus10024892.g ID=Lus10024892.BGIv1.0 annot-version=v1.0 ATGTTGGTGGGAACTGTGTTTAATCTTGCTGGGTTGACCTTGGTCTTTTCTGGGTACCCAACCTTAGACGTTTACGGTGTCGGAGTGCCTTACTTTTGTG TTTCTGGGGCAGTCTGCTTCTTAGTCATAGTTGTGATCGGAGATTGTTGGAATCTGGTGAAGCATTTTCCATGTGATATGATGGGATCAAACAAGCATAG GATATTAATGGTTTCTGATTTTTTCTACCCCAACTTTGGTGGTGTGGAGAATCACATATATTATCTCTCCCAATGCCTGCTAGAGCTTGGTCACAAGGTA GTAGTTCTGACCCATGCGTATGGTAATCGCTCCGGTGTGAGATACATGACAGGGGGGCTGAAAGTTTATTACATACCATGGAGGCCGTTTCTGATGCAGA ACACATTGCCTACCTTTTACGGCACGCTTCCAATCATAAGAACCATACTTATTCGAGAACAAATATCGTTGGTCCACGGACACCAGGCTTTCTCAACTCT TTGTCACGAGGCGTTGATGCACGCACGTACGATGGGGTACAAAGTTGTGTTTACTGACCATTCGCTCTATGGTTTTGCTGATGTTGGAAGCATCCACATG AACAAGGTTTTGCAGTTTACTTTAGCTGACGTCACACAAGCCATATGTGTTTCTCATACAAGCAAGGAAAACACGGTGCTCCGGTCAGGTATACAGCCAG AAAAGGTCTACGTTATCCCAAATGCTGTGGATACCGCTATGTTCAAGCCTGCAGAAGAACGACCTGGTGGTAATGAAATTGTTATTGTTGTGATAAGTAG ATTGGTTTATCGTAAGGGAGCGGATTTGCTTGTTGAGGTCATCCCAGAAGTCTGTCGGCTGTATCCCAATGTCCATTTCATTGTTGGAGGTGATGGGCCG AAACGAGTGCGCCTAGAAGAAATGAGGGAAAAGCATTCCCTCCAAGACCGGGTCGAGATGCTGGGTGCTGTTCCACATGCTTCGGTTCGATCTGTATTGG TTTCGGGCCACATATTCTTAAACAGTTCTCTGACCGAAGCATTCTGCATAGCCATTTTAGAAGCTGCGAGTTGCGGGTTACTTACAGTCAGCACCCGTGT TGGGGGTGTTCCGGAGGTTCTACCTGATGACATGATTGTACTTGCACAGCCTGATCCTACTGATATGGTGCAAGCGATCAAGAAGGCGATATCTTTGCTT CCCGAAATTGATCCTCAAGTAATGCACGAACGTATGAAGAAGCTCTATGACTGGCACGATGTGGCGAAAAGGACAGAGATTGTATATGACCGAGCCTTGA AATGCCCCAACCAACCTTTTCTAGGGAGATTATCTCGGTACCTTTCTTGTGGCTCATGGGCAGGAAAGCTGTTTTGCTTGGTCATGATCATTGATTTTCT CATGTGGCGCCTGCTGAAGCTTTGGCAGAAGGAAGAAGACATCGATAAGGTGCCTGAGTTTGTCATCCCTCCCGGAGATCCTCACACAAGAGAAACTTAA
AA sequence Show only first row Show all	>Lus10024892 pacid=23178880 polypeptide=Lus10024892 locus=Lus10024892.g ID=Lus10024892.BGIv1.0 annot-version=v1.0 MLVGTVFNLAGLTLVFSGYPTLDVYGVGVPYFCVSGAVCFLVIVVIGDCWNLVKHFPCDMMGSNKHRILMVSDFFYPNFGGVENHIYYLSQCLLELGHKV VVLTHAYGNRSGVRYMTGGLKVYYIPWRPFLMQNTLPTFYGTLPIIRTILIREQISLVHGHQAFSTLCHEALMHARTMGYKVVFTDHSLYGFADVGSIHM NKVLQFTLADVTQAICVSHTSKENTVLRSGIQPEKVYVIPNAVDTAMFKPAEERPGGNEIVIVVISRLVYRKGADLLVEVIPEVCRLYPNVHFIVGGDGP KRVRLEEMREKHSLQDRVEMLGAVPHASVRSVLVSGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMIVLAQPDPTDMVQAIKKAISLL PEIDPQVMHERMKKLYDWHDVAKRTEIVYDRALKCPNQPFLGRLSRYLSCGSWAGKLFCLVMIIDFLMWRLLKLWQKEEDIDKVPEFVIPPGDPHTRET

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45100		SETH2	UDP-Glycosyltransferase superf...		Lus10024892 [exp]	0	1
AT5G38970		ATBR6OX, CYP85A...	brassinosteroid-6-oxidase 1 (....		Lus10005075 [exp]	18.1	0.8244
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	31.5	0.8189
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10027775 [exp]	34.4	0.8227
AT1G75590			SAUR-like auxin-responsive pro...		Lus10024322 [exp]	68.1	0.7855
AT5G12440	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10014914 [exp]	87.0	0.7705
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10003807 [exp]	125.4	0.7725
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10004186 [exp]	144.7	0.7682
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10000646 [exp]	151.2	0.7641
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10006348 [exp]	164.4	0.7512
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10011157 [exp]	209.0	0.7438

Compare expression of checked genes

Lus10024892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.