Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53170 544 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48730 375 / 1e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06430 297 / 2e-95 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39620 174 / 2e-48 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G02860 170 / 1e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 169 / 4e-45 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT2G35130 151 / 1e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G41720 147 / 6e-38 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G42310 145 / 3e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G18110 145 / 5e-37 EMB1270 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022787 [exp] 397 / 1e-133 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 394 / 1e-132 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000862 [exp] 306 / 4e-99 AT3G06430 644 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028683 [exp] 291 / 9e-93 AT3G06430 640 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027552 [exp] 275 / 5e-87 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039311 [exp] 193 / 3e-58 AT3G06430 358 / 5e-123 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 174 / 8e-47 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10024144 [exp] 156 / 1e-46 AT3G53170 96 / 5e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 163 / 5e-43 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058300 [exp] 614 / 0 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G243600 [exp] 403 / 2e-136 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G153900 [exp] 313 / 8e-102 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G098700 [exp] 302 / 2e-97 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 171 / 7e-46 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.005G082400 [exp] 162 / 3e-44 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G092100 [exp] 160 / 6e-42 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G123600 [exp] 152 / 5e-40 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.007G123900 [exp] 154 / 7e-40 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 153 / 1e-39 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024893 pacid=23178866 polypeptide=Lus10024893 locus=Lus10024893.g ID=Lus10024893.BGIv1.0 annot-version=v1.0 ATGCAGCTGAACTCCGTTTCATCCGCCAACATCTCCTTCTTATCTCCTGCTTCCTCGCCCCTGCCCACCGCCCATTCGACGAAATGCCTCACAGACACCC AACTCCCTCACCCATCTCCCTCACTTCTCACCGTCTGCTGCTCCAAACGCGAAAACACCCAGTTACTCCGCACGGGCTTGGAAAAGCCAATCAACAAAAC TTTATCCAATGTTCTCAGAACCGAAGCAGCCATCAAAGCTATTGAGCAGAAGGCCAACTCCAGCAAGCACACCACTCTCTGGCCCAAGGCTGTTTTGGAT GCTCTCGACGACGCAATCAGCTCCCTCAGCTGGGAGTCTGCTCTCAAGATTTTTGGACTCCTTCGGAAGCAGAAATGGTACGAACCGAGGAGTCAAATTT ACTCCAAATTGATGATGATGCTTGGGAAATGCCGGCAGGCTGAACAGGCTACTTTACTTTTTGAGGTGATGCAACGTGATGGGATGAAACCCACCATTGA TGTATACACAGCTCTCATAAGTGCTTACGGCCATAGTGGCCGTTTTGAAGAGGCATTCTCCATCATCGACGAGATGAAATCCGTCTCGTCTGACTGCAAA CCGGATGTGTACACGTACTCAATTCTCTTGAATAGTTGCACTAAGCAACGCCGGTTCGATCTCATCGGAATAATTCTAGACGAGATGTCGTATCTTGGAA TCCAAGGCACCACTGTAACGTTCAACACGATTGTCGATGGGTACGGTAAGGCAGGAATGTTTTTCGAAATGGAGAATGCATTGGCGGAAATGATCGAGAA TGATGGATTATCTGTTCCTGATGTTTTCACCTTGAATTCTGTTATCGGAGCTTGTGGTAGAAATGGCGAAATTGAGAAGATGGAGAAGTGGTACGAGGAG TTTCAGCTGATGGGTGTGGTTCCAGACGTGAAGACGTTTAACATATTGATTCGATCTTACGGGAAGGCAGGAATGCACCGGAAGATGATGTCTGTTTTGA AGTTTATGAAGAAGAGGTTCTTTAGTCCGACCATTATAACTCACAACATTATCCTCGATACGTACGGGAAAGGAGGCTATATCAAAGAGATGGATCGGTA CTTCAAGAATATGAAGCATCAAGGATTGAAGCCTAACAGTGTCACTTATTGCTCTCTTGTCAGTGCCTATGTCAAAGCAGGGGATATGAATATGATGAAG GTCGATTCGATTATGAGGCATGTGGAGAATTCGGATGTGGTTCTGGATACTCCTTTCTTTAACTGTGTCATCAGTGCTTATGGTCGTGCTGGAGAAGTGG AAAAGATGGAAGTGTTGTTTTCGAGCATGACGGAGAAGAATTGCAGGCCTGATTATGTTACTTACGCTACTATGATCCATGCTTACAATGCGAGAGGAAT GGCGGAGCCTGTGAAAGATTTGGAGAAGAAGATGCTTGCAGCACAAAAAAGTTCAGGTATCTGA
AA sequence Show only first row Show all	>Lus10024893 pacid=23178866 polypeptide=Lus10024893 locus=Lus10024893.g ID=Lus10024893.BGIv1.0 annot-version=v1.0 MQLNSVSSANISFLSPASSPLPTAHSTKCLTDTQLPHPSPSLLTVCCSKRENTQLLRTGLEKPINKTLSNVLRTEAAIKAIEQKANSSKHTTLWPKAVLD ALDDAISSLSWESALKIFGLLRKQKWYEPRSQIYSKLMMMLGKCRQAEQATLLFEVMQRDGMKPTIDVYTALISAYGHSGRFEEAFSIIDEMKSVSSDCK PDVYTYSILLNSCTKQRRFDLIGIILDEMSYLGIQGTTVTFNTIVDGYGKAGMFFEMENALAEMIENDGLSVPDVFTLNSVIGACGRNGEIEKMEKWYEE FQLMGVVPDVKTFNILIRSYGKAGMHRKMMSVLKFMKKRFFSPTIITHNIILDTYGKGGYIKEMDRYFKNMKHQGLKPNSVTYCSLVSAYVKAGDMNMMK VDSIMRHVENSDVVLDTPFFNCVISAYGRAGEVEKMEVLFSSMTEKNCRPDYVTYATMIHAYNARGMAEPVKDLEKKMLAAQKSSGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024893 [exp]	0	1
AT4G29400			Protein of unknown function (D...		Lus10032701 [exp]	2.8	0.9114
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10035773 [exp]	3.0	0.9292
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Lus10013424 [exp]	4.5	0.9225
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013435 [exp]	4.9	0.9134
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	5.8	0.9257
					Lus10040882 [exp]	6.0	0.9240
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10028510 [exp]	6.5	0.9117
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10009586 [exp]	6.7	0.9111
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10010473 [exp]	8.1	0.9081
AT3G23760			unknown protein		Lus10043212 [exp]	8.4	0.9095

Compare expression of checked genes

Lus10024893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.